Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BGM23_RS01040 Genome accession   NZ_CP017072
Coordinates   178521..179633 (-) Length   370 a.a.
NCBI ID   WP_003226809.1    Uniprot ID   -
Organism   Bacillus sp. FJAT-14266     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 173521..184633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM23_RS01025 (BGM23_01025) gyrA 173611..176076 (-) 2466 WP_014475555.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  BGM23_RS01030 (BGM23_01030) gyrB 176287..178203 (-) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BGM23_RS01035 (BGM23_01035) remB 178258..178503 (-) 246 WP_003219266.1 extracellular matrix regulator RemB -
  BGM23_RS01040 (BGM23_01040) recF 178521..179633 (-) 1113 WP_003226809.1 DNA replication/repair protein RecF Machinery gene
  BGM23_RS01045 (BGM23_01045) rlbA 179649..179864 (-) 216 WP_003226810.1 ribosome maturation protein RlbA -
  BGM23_RS01050 (BGM23_01050) dnaN 179995..181131 (-) 1137 WP_003226811.1 DNA polymerase III subunit beta -
  BGM23_RS01055 (BGM23_01055) dnaA 181320..182660 (-) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  BGM23_RS01060 (BGM23_01060) rpmH 183287..183421 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  BGM23_RS01065 (BGM23_01065) rnpA 183572..183922 (+) 351 WP_003242628.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42318.37 Da        Isoelectric Point: 7.3661

>NTDB_id=195152 BGM23_RS01040 WP_003226809.1 178521..179633(-) (recF) [Bacillus sp. FJAT-14266]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALEVSDPLDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=195152 BGM23_RS01040 WP_003226809.1 178521..179633(-) (recF) [Bacillus sp. FJAT-14266]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTACCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TTTCAAGAGGGCTTGAAGAACTGACCCTGAAATACCATACAGCTCTTGAGGTATCAGATCCCCTAGATTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCACATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.73

100

0.997

Multiple sequence alignment