Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CCZ36_RS29715 Genome accession   NZ_CP021707
Coordinates   6540814..6541455 (-) Length   213 a.a.
NCBI ID   WP_128818969.1    Uniprot ID   -
Organism   Streptomyces sp. S063     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6535814..6546455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ36_RS29700 aceB 6537722..6539341 (-) 1620 WP_128818967.1 malate synthase A -
  CCZ36_RS29705 - 6539625..6540242 (-) 618 WP_237302762.1 nucleotidyltransferase family protein -
  CCZ36_RS29710 - 6540458..6540760 (+) 303 WP_069736765.1 DUF5955 family protein -
  CCZ36_RS29715 vraR 6540814..6541455 (-) 642 WP_128818969.1 response regulator transcription factor Regulator
  CCZ36_RS29720 - 6541452..6542762 (-) 1311 WP_069736767.1 sensor histidine kinase -
  CCZ36_RS29725 - 6542873..6543952 (+) 1080 WP_128818970.1 ABC transporter permease -
  CCZ36_RS29730 amiE 6543949..6544629 (+) 681 WP_069736769.1 ABC transporter ATP-binding protein Regulator
  CCZ36_RS29735 - 6544747..6545550 (-) 804 WP_032775366.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22213.50 Da        Isoelectric Point: 6.9932

>NTDB_id=195145 CCZ36_RS29715 WP_128818969.1 6540814..6541455(-) (vraR) [Streptomyces sp. S063]
MSAGGDAIRLLLADDHPVVRAGLRAVLDTEPGFRVAGEAATAEEAVTLAAKGGFDLVLMDLQFGAGMHGAEATATITAAP
DGPRVLILTTYDSDADILAAVEAGASGYLLKDAPPQELAAAVRTAAAGRSALAPSVAHRLMDRMRTPAEALTRRELEVLQ
LVGEGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLIRR

Nucleotide


Download         Length: 642 bp        

>NTDB_id=195145 CCZ36_RS29715 WP_128818969.1 6540814..6541455(-) (vraR) [Streptomyces sp. S063]
GTGAGCGCGGGCGGGGACGCGATCCGGCTGCTGCTCGCGGACGACCATCCGGTGGTCCGGGCGGGGCTGCGGGCGGTCCT
GGACACCGAGCCGGGATTCCGGGTCGCCGGTGAGGCCGCTACCGCCGAGGAGGCCGTCACCCTGGCGGCGAAGGGCGGCT
TCGACCTGGTCCTGATGGATCTGCAGTTCGGTGCGGGGATGCACGGGGCGGAGGCCACGGCGACGATCACCGCGGCGCCG
GACGGCCCCCGGGTCCTGATCCTGACCACGTACGACTCCGACGCGGACATCCTGGCGGCGGTCGAGGCCGGGGCGAGCGG
CTATCTGCTCAAGGACGCGCCGCCGCAGGAGCTGGCGGCCGCGGTGCGCACGGCGGCGGCGGGCCGTTCGGCGCTGGCGC
CCTCCGTGGCCCACCGGCTGATGGACCGGATGCGCACCCCGGCCGAGGCCCTGACCCGGCGGGAGCTGGAGGTGCTCCAG
CTGGTCGGAGAGGGCCTGTCGAACCTGCAGATCAGCAAACGGCTGTTCCTGAGCCAGGCCACGGTGAAGTCCCACCTGGT
GCACATCTACGCCAAGCTCGGCGTCGACTCCCGTACGTCGGCGGTCGCGGCGGCCACGGCCCGCCGGCTCATCCGCCGCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(150-204)

Response regulator receiver domain (Response_reg)

(11-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.5

97.653

0.366