Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CCZ36_RS26590 Genome accession   NZ_CP021707
Coordinates   5741347..5742030 (-) Length   227 a.a.
NCBI ID   WP_128818715.1    Uniprot ID   -
Organism   Streptomyces sp. S063     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5736347..5747030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ36_RS26575 - 5737528..5738625 (+) 1098 WP_069739321.1 thiamine ABC transporter substrate-binding protein -
  CCZ36_RS26580 - 5738700..5740316 (+) 1617 WP_069739320.1 iron ABC transporter permease -
  CCZ36_RS26585 - 5740321..5741343 (+) 1023 WP_069739319.1 ABC transporter ATP-binding protein -
  CCZ36_RS26590 vraR 5741347..5742030 (-) 684 WP_128818715.1 response regulator transcription factor Regulator
  CCZ36_RS26595 - 5742024..5743280 (-) 1257 WP_128818716.1 histidine kinase -
  CCZ36_RS26600 - 5743423..5744625 (+) 1203 WP_128818717.1 hypothetical protein -
  CCZ36_RS26605 - 5744622..5745818 (+) 1197 WP_069739316.1 glycosyltransferase family 4 protein -
  CCZ36_RS34915 - 5745821..5745961 (+) 141 WP_164873551.1 hypothetical protein -
  CCZ36_RS26610 - 5745964..5746419 (+) 456 WP_069739315.1 SRPBCC domain-containing protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24076.76 Da        Isoelectric Point: 5.6579

>NTDB_id=195136 CCZ36_RS26590 WP_128818715.1 5741347..5742030(-) (vraR) [Streptomyces sp. S063]
MVIRVLVADDQAVVRTAFAGLLSTQEDIEVVGEAEDGVQAVAGAAELRPDVALLDIRMPRLGGIDAAREIVAASNGATRA
LMLTTFGLDEYVYDALTAGASGFLLKDATFPELLHAVRVVAGGHALLAPEITGRLIAEFARQRVSAPPKRSVEGLTAREA
EVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYELGLVVAGAHRLRTDGP

Nucleotide


Download         Length: 684 bp        

>NTDB_id=195136 CCZ36_RS26590 WP_128818715.1 5741347..5742030(-) (vraR) [Streptomyces sp. S063]
GTGGTGATCCGGGTGCTGGTGGCCGACGACCAGGCCGTCGTACGGACGGCGTTCGCCGGCCTGTTGAGCACACAGGAGGA
CATCGAGGTGGTCGGGGAGGCGGAGGACGGCGTACAGGCCGTGGCCGGGGCGGCCGAACTGCGTCCCGATGTGGCCCTGT
TGGACATCCGGATGCCCCGCCTCGGCGGCATCGACGCGGCGCGCGAGATCGTCGCGGCGTCGAACGGGGCGACCAGGGCG
CTGATGCTGACGACGTTCGGCCTGGACGAGTACGTGTACGACGCCCTCACCGCCGGGGCCAGCGGCTTCCTGCTGAAGGA
CGCGACCTTTCCCGAACTGCTGCACGCCGTACGGGTGGTGGCGGGCGGCCACGCCCTGCTGGCCCCCGAGATCACCGGGC
GGCTCATCGCGGAGTTCGCCCGGCAGCGGGTCAGCGCTCCCCCGAAGCGCTCGGTCGAGGGGCTGACCGCGCGCGAGGCC
GAGGTGCTCGTCCTGATCGCCCGGGGATTGTCCAACGCGGACATCGCCGACCGGCTGACCATCACCGACCACACGGTGAA
GACCCACATCAACCGGCTGTTCGCGAAGATGGGGCTGCGGGACCGGGCGCAGGCGGTGATCCTCGCGTACGAGCTGGGTC
TGGTGGTGGCGGGAGCCCATCGCCTCCGGACGGACGGCCCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.553

95.595

0.388