Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BGM21_RS11755 Genome accession   NZ_CP017071
Coordinates   2358043..2359764 (-) Length   573 a.a.
NCBI ID   WP_020278546.1    Uniprot ID   -
Organism   Geobacillus thermoleovorans strain FJAT-2391     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2353043..2364764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM21_RS11730 (BGM21_11730) - 2353804..2354052 (+) 249 WP_011231866.1 DUF2627 domain-containing protein -
  BGM21_RS11735 (BGM21_11735) - 2354128..2354856 (-) 729 WP_011231867.1 glycerophosphodiester phosphodiesterase -
  BGM21_RS11740 (BGM21_11740) - 2354966..2355118 (+) 153 WP_011231868.1 YycC family protein -
  BGM21_RS11745 (BGM21_11745) spo0A 2355270..2356088 (-) 819 WP_025038882.1 sporulation transcription factor Spo0A -
  BGM21_RS11750 (BGM21_11750) spoIVB 2356473..2357768 (-) 1296 WP_011231870.1 SpoIVB peptidase -
  BGM21_RS11755 (BGM21_11755) recN 2358043..2359764 (-) 1722 WP_020278546.1 DNA repair protein RecN Machinery gene
  BGM21_RS11760 (BGM21_11760) ahrC 2359891..2360340 (-) 450 WP_011231872.1 transcriptional regulator AhrC/ArgR -
  BGM21_RS11765 (BGM21_11765) - 2360397..2361245 (-) 849 WP_020278545.1 TlyA family RNA methyltransferase -
  BGM21_RS11770 (BGM21_11770) dxs 2361249..2363141 (-) 1893 WP_025038883.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BGM21_RS11775 (BGM21_11775) - 2363389..2364282 (-) 894 WP_011231875.1 polyprenyl synthetase family protein -
  BGM21_RS11780 (BGM21_11780) - 2364286..2364516 (-) 231 WP_012820585.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64325.67 Da        Isoelectric Point: 4.9678

>NTDB_id=195121 BGM21_RS11755 WP_020278546.1 2358043..2359764(-) (recN) [Geobacillus thermoleovorans strain FJAT-2391]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQK
CADVGIDASDGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEAL
ARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSG
EGRGLDSIGEAMRHLDDVAGMDAALKDAHETTANCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGAT
IADILHYAEMIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYARRLIERIHQELKDLYMDKTKFDIVFA
KREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQGVTSIVFDEVDTGVS
GRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRH
AKELLELAAKMKH

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=195121 BGM21_RS11755 WP_020278546.1 2358043..2359764(-) (recN) [Geobacillus thermoleovorans strain FJAT-2391]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCCATTATCGAGTCGCTCTCGTTGTCGTTTGACAAAGGGCTGACGGTGTT
AACCGGCGAAACGGGAGCCGGCAAATCGATCATCATCGACGCGATTCATTTGTTGATCGGCGGACGCGGCTCCGCTGAAT
TTGTCCGCTTTGGAGCGGAAAAGGCGGAAATCGAAGGGCTGTTTTTGCTTGATGATGACCGCCATCCGTGCTGGCAAAAA
TGCGCAGACGTTGGCATCGACGCCAGCGACGGCATGATCGTGTTGCGCCGCGATATTTTCGCCAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTCGTCACGACGGCGGTGCTGCGCGACATCGGGGCGACGCTTGTTGATATTCACGGCCAGCATG
AACATCAAGAACTGATGGATCCGTCCCGCCATCTGCCGCTTTTAGACGAGTTCGGCGGCCTAGAGGCGGCAGAGGCGCTT
GCTCGCTACCGCGCCGTCTACGAGCGGTATGAGGAGCTCGGAAACAAATTGAAAAAGCTGAGCGAAAATGAACAGCAAAT
GGCGCACCGGCTTGATTTGCTGACGTTTCAGCTGCGTGAAATCGAGCAGGCGGCGCTTGAGCCGGGCGAGGACGAGCGGC
TGATGGAGGAAAAAGTTCGCATCGTCAATTTTCAAAAAATTTATACCGCGCTGCAGAAAAGCTATGAGGCCCTCTCCGGA
GAGGGACGCGGGCTTGATTCCATCGGGGAGGCGATGCGCCATCTCGATGACGTCGCAGGCATGGATGCAGCGCTCAAAGA
TGCGCATGAAACGACGGCAAACTGCTACTATTTGCTCGAGGAAGTCATGTACAAGCTGCGCGATCAAATTGAGGAGATGG
AATACGACCCAGAGCGGCTCGATGCCATTGAAAGCCGTCTCGCGGAAATCGGGCAGCTCAAACGAAAATACGGGGCGACA
ATCGCCGATATTTTGCACTATGCCGAGATGATCGCCGAGGAAATCGAGACAATCGAAAATCGCGAAACGCATGTGCATGA
GCTTAAGCAGCAGCTCGCTCTGGTGACGGACGAGTTGCTCACGGAGGCGAAAAACGTCACCGCTGTTCGGCAAACATATG
CCCGGCGCCTGATTGAGCGCATTCATCAAGAACTGAAAGACTTGTACATGGACAAAACGAAATTTGACATCGTATTTGCC
AAGCGCGAAGGATCGCTTGACGCCCCCTTGGTCGACGGCGTGCCGGTTAGGTTCCAAGAAGACGGCATCGATGTCGTCGA
GTTTTACATTTCGACGAACGTCGGCGAGCCGTTAAAACCGCTCGTCAAAGTCGCTTCCGGCGGCGAGCTGTCGCGCATTA
TGCTGGCGTTGAAAACGATTTTTTCCAAACATCAAGGAGTGACGTCGATTGTTTTTGATGAGGTCGACACCGGTGTCAGC
GGACGCGTCGCCCAGGCAATGGCGGAAAAAATTTACCGCATCGCCAGCCAGTCGCAAGTGCTTTGCATTTCCCATCTGCC
GCAAGTCGCTGCGATGGCGGACACGCACTTGTTGATCGCCAAAGAGACGGATGGGGAACGGACGAAAACAGTCGTGAGGA
AGCTCAATGAGGAGGAGAAAGTGAAAGAAATCGGGCGGATGATTTCCGGCGTCGAGATGACGGAATTGACGAAACGGCAT
GCCAAAGAGCTGTTGGAACTGGCGGCGAAAATGAAACATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.672

100

0.618

Multiple sequence alignment