Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BGM21_RS03760 Genome accession   NZ_CP017071
Coordinates   754308..756131 (+) Length   607 a.a.
NCBI ID   WP_068894950.1    Uniprot ID   -
Organism   Geobacillus thermoleovorans strain FJAT-2391     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 749308..761131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM21_RS03740 (BGM21_03740) cls 749390..750898 (+) 1509 WP_011230321.1 cardiolipin synthase -
  BGM21_RS03750 (BGM21_03750) - 751315..752973 (+) 1659 WP_069304063.1 IS1634 family transposase -
  BGM21_RS03755 (BGM21_03755) - 753097..754308 (+) 1212 WP_231925993.1 competence protein CoiA -
  BGM21_RS03760 (BGM21_03760) pepF 754308..756131 (+) 1824 WP_068894950.1 oligoendopeptidase F Regulator
  BGM21_RS03765 (BGM21_03765) - 756145..756342 (-) 198 WP_011230324.1 hypothetical protein -
  BGM21_RS03770 (BGM21_03770) spxH 756768..757661 (-) 894 WP_011230325.1 ClpXP adapter protein SpxH -
  BGM21_RS03775 (BGM21_03775) - 757654..758067 (-) 414 WP_011230326.1 hypothetical protein -
  BGM21_RS03780 (BGM21_03780) - 758170..758793 (-) 624 WP_011230327.1 lytic transglycosylase domain-containing protein -
  BGM21_RS03785 (BGM21_03785) - 758790..759383 (-) 594 WP_011230328.1 CYTH domain-containing protein -
  BGM21_RS03790 (BGM21_03790) - 759519..759896 (+) 378 WP_011230329.1 hypothetical protein -
  BGM21_RS03795 (BGM21_03795) - 760034..760672 (+) 639 WP_011230330.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70270.35 Da        Isoelectric Point: 4.9959

>NTDB_id=195111 BGM21_RS03760 WP_068894950.1 754308..756131(+) (pepF) [Geobacillus thermoleovorans strain FJAT-2391]
MTVEEKKAKKSLPLRSEIPVEETWRLEDIFPTDDAWEEEFKQVKAMIPKLGEYKGRLGESPEVLYEALQCQDDVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDARAKSLYSEASSAMAFIVPEILAIDEAVLRSFLEQYEPLRLYAHALDEITRQRPHVLS
AEEEAILAQAAEVMQATSDTFSALNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFYAVYHTYEKFQNTFA
NTLAGTVKKDNFFARIRRYRSAREAALDANNIPESVYDNLIAAIHEHLPLLHRYVRLRKRVLGLDELHMYDLYTPLVQEV
KMEVTYEEAKQYMLEGLAPLGEEYVAIVKEGLDNRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDYLLRTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQQGEALTAETLSALYYDLNKTYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVRRYID
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLDEMERLLEK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=195111 BGM21_RS03760 WP_068894950.1 754308..756131(+) (pepF) [Geobacillus thermoleovorans strain FJAT-2391]
ATGACGGTGGAGGAAAAGAAAGCGAAAAAGTCGCTGCCGCTGCGAAGCGAGATTCCTGTGGAAGAAACGTGGCGGCTTGA
GGACATTTTTCCCACCGATGACGCCTGGGAAGAAGAATTCAAACAAGTGAAGGCAATGATTCCAAAGCTTGGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGCTGTATGAAGCATTGCAATGCCAAGATGACGTATCGATGCGCCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGATCAAGATACGACCAACTCGTTTTACCAAGGGCTCGACGCCCGGGCGAAAAG
CTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGCGATCGATGAAGCGGTGCTGCGCTCGT
TTTTGGAACAATACGAGCCGCTTCGCTTGTATGCGCACGCGTTAGACGAAATTACGCGCCAGCGCCCGCACGTGCTGTCG
GCAGAAGAGGAGGCGATCTTGGCGCAGGCAGCCGAGGTGATGCAGGCGACATCCGACACGTTCAGCGCGTTGAACAACGC
TGATTTGACGTTTCCGACGATCATCGATGAAAACGGCGAGGAAGTCGAAGTCACGCACGGCCGGTTCATCCGCTTTTTAG
AAAGCACGGACCGCCGCGTCCGCCGCGATGCGTTTTACGCCGTATACCATACGTATGAGAAGTTTCAAAATACGTTCGCC
AATACGCTTGCCGGCACGGTGAAAAAAGACAACTTTTTCGCCCGCATCCGCCGCTACCGTTCGGCGCGAGAAGCGGCGTT
GGATGCGAACAACATTCCGGAGAGCGTCTATGACAATCTAATCGCCGCGATTCACGAACATTTGCCGCTGTTGCATCGGT
ACGTGCGGCTGCGCAAACGAGTGCTTGGGCTTGATGAGCTGCATATGTACGATTTGTACACGCCGCTTGTGCAAGAAGTG
AAAATGGAAGTGACCTACGAGGAAGCGAAGCAATATATGCTTGAAGGGCTCGCGCCGCTTGGCGAGGAATATGTGGCGAT
CGTGAAAGAAGGTCTTGACAACCGTTGGGTCGATGTGCGCGAAAACAAAGGAAAGCGAAGCGGCGCCTATTCGTCGGGAG
CGTACGGCACCCATCCGTACATTTTGCTCAACTGGCAGGACAATGTGAACAATTTGTTTACACTTGTGCATGAGTTTGGC
CATTCGGTGCACAGCTACTATACGCGCAAAACGCAGCCGTATCCATATGCGCATTATTCAATTTTCGTCGCCGAAGTGGC
GTCGACGTGCAATGAGGCGCTGTTGAACGACTACTTGCTGAGAACGATCGATGATGAGAAAAAGCGGCTCTATTTGCTCA
ACCATTATCTTGAGGGGTTCCGCGGCACGGTTTTTCGCCAGACGATGTTCGCGGAGTTTGAGCATTTGATCCATTTGAAG
GCGCAACAAGGCGAAGCGTTGACGGCCGAAACGTTGAGCGCCCTTTATTACGACTTAAATAAAACGTATTTTGGCGATGA
TATTGTCGTGGACAAAGAAATCGGCCTCGAGTGGGCGCGCATTCCGCATTTTTATTACAACTACTACGTGTACCAATACG
CAACCGGCTTCAGCGCGGCGACTGCACTCAGTAAACAAATTTTGGAAGAAGGCGAACCGGCGGTGAGACGGTACATCGAC
TTTTTGAAAGCCGGCAGCTCTGATTACCCGATTGAAGTGTTGAAAAAAGCCGGCGTCGACATGACGAGCGCCGAGCCGAT
CCGCCAAGCGTGCCAAGTGTTTGCGGAGAAGCTTGATGAGATGGAGCGGCTGCTTGAGAAATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(213-592)

Oligopeptidase F (Peptidase_M3_N)

(122-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.265

97.694

0.501

Multiple sequence alignment