Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM398_RS12210 Genome accession   NZ_CP021691
Coordinates   2416376..2416852 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0151     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2411376..2421852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM398_RS12165 (AM398_12110) sbmC 2411869..2412342 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  AM398_RS12170 (AM398_12115) yeeA 2412540..2413598 (+) 1059 WP_001200890.1 FUSC family protein -
  AM398_RS12175 (AM398_12120) tmaR 2413770..2414099 (+) 330 WP_000450409.1 DUF496 family protein -
  AM398_RS12180 (AM398_12125) - 2414200..2414382 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AM398_RS12185 (AM398_12130) - 2414436..2414582 (+) 147 Protein_2223 transposase domain-containing protein -
  AM398_RS25755 - 2414871..2414951 (-) 81 Protein_2224 hypothetical protein -
  AM398_RS12190 (AM398_12135) yeeW 2414997..2415191 (-) 195 WP_000988600.1 DUF5983 family protein -
  AM398_RS12195 (AM398_12140) - 2415253..2415561 (-) 309 Protein_2226 TA system toxin CbtA family protein -
  AM398_RS12200 (AM398_12145) cbeA 2415650..2416018 (-) 369 WP_001285591.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  AM398_RS12205 (AM398_12150) yeeT 2416092..2416313 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  AM398_RS12210 (AM398_12155) radC 2416376..2416852 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  AM398_RS12215 (AM398_12160) - 2416868..2417347 (-) 480 WP_047634712.1 antirestriction protein -
  AM398_RS12220 (AM398_12165) - 2417429..2418250 (-) 822 Protein_2231 DUF932 domain-containing protein -
  AM398_RS12230 (AM398_12175) - 2418471..2418881 (-) 411 WP_000846713.1 hypothetical protein -
  AM398_RS12235 (AM398_12180) - 2418897..2419580 (-) 684 WP_000775500.1 hypothetical protein -
  AM398_RS12240 (AM398_12185) - 2419716..2420786 (-) 1071 WP_000102644.1 patatin-like phospholipase family protein -
  AM398_RS12245 (AM398_12190) - 2420783..2421688 (-) 906 WP_039023260.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=195048 AM398_RS12210 WP_001186773.1 2416376..2416852(-) (radC) [Escherichia coli strain AR_0151]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=195048 AM398_RS12210 WP_001186773.1 2416376..2416852(-) (radC) [Escherichia coli strain AR_0151]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCTGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392