Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AM398_RS12155 Genome accession   NZ_CP021691
Coordinates   2408948..2410375 (-) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0151     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2403948..2415375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM398_RS12130 (AM398_12075) yeeZ 2404003..2404827 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  AM398_RS12135 (AM398_12080) yeeY 2404873..2405802 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  AM398_RS25750 yoeI 2406017..2406079 (+) 63 WP_010723108.1 membrane protein YoeI -
  AM398_RS12140 (AM398_12085) plaP 2406069..2407427 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AM398_RS12145 (AM398_12090) tsuA 2407606..2408664 (+) 1059 WP_000492333.1 thiosulfate utilization transporter TsuA/YeeE -
  AM398_RS12150 (AM398_12095) tsuB 2408678..2408905 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AM398_RS12155 (AM398_12100) sbcB 2408948..2410375 (-) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  AM398_RS12160 (AM398_12105) dacD 2410584..2411750 (+) 1167 WP_000830144.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AM398_RS12165 (AM398_12110) sbmC 2411869..2412342 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  AM398_RS12170 (AM398_12115) yeeA 2412540..2413598 (+) 1059 WP_001200890.1 FUSC family protein -
  AM398_RS12175 (AM398_12120) tmaR 2413770..2414099 (+) 330 WP_000450409.1 DUF496 family protein -
  AM398_RS12180 (AM398_12125) - 2414200..2414382 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AM398_RS12185 (AM398_12130) - 2414436..2414582 (+) 147 Protein_2223 transposase domain-containing protein -
  AM398_RS25755 - 2414871..2414951 (-) 81 Protein_2224 hypothetical protein -
  AM398_RS12190 (AM398_12135) yeeW 2414997..2415191 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=195047 AM398_RS12155 WP_000980539.1 2408948..2410375(-) (sbcB) [Escherichia coli strain AR_0151]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=195047 AM398_RS12155 WP_000980539.1 2408948..2410375(-) (sbcB) [Escherichia coli strain AR_0151]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581