Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM398_RS06880 Genome accession   NZ_CP021691
Coordinates   1334298..1334774 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0151     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1329298..1339774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM398_RS06835 (AM398_06790) gspL 1329673..1330851 (+) 1179 WP_000094991.1 type II secretion system protein GspL -
  AM398_RS06840 (AM398_06795) yghD 1330853..1331389 (+) 537 WP_000942785.1 GspM family type II secretion system protein YghD -
  AM398_RS06845 (AM398_06800) - 1331670..1332512 (-) 843 WP_022645115.1 DUF4942 domain-containing protein -
  AM398_RS06850 (AM398_06805) - 1332597..1332791 (-) 195 WP_024181941.1 DUF957 domain-containing protein -
  AM398_RS06855 (AM398_06810) - 1332816..1333019 (-) 204 WP_001398797.1 DUF5983 family protein -
  AM398_RS06860 (AM398_06815) - 1333019..1333393 (-) 375 WP_000854765.1 TA system toxin CbtA family protein -
  AM398_RS06865 (AM398_06820) - 1333483..1333851 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM398_RS06875 (AM398_06830) - 1334014..1334235 (-) 222 WP_000692341.1 DUF987 domain-containing protein -
  AM398_RS06880 (AM398_06835) radC 1334298..1334774 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  AM398_RS06885 (AM398_06840) - 1334790..1335269 (-) 480 WP_057109541.1 antirestriction protein -
  AM398_RS06890 (AM398_06845) - 1335535..1336353 (-) 819 WP_001175165.1 DUF932 domain-containing protein -
  AM398_RS06895 (AM398_06850) - 1336443..1336676 (-) 234 WP_001278293.1 DUF905 family protein -
  AM398_RS06900 (AM398_06855) - 1336682..1337359 (-) 678 WP_001097302.1 hypothetical protein -
  AM398_RS06905 (AM398_06860) - 1337507..1338187 (-) 681 WP_001282921.1 WYL domain-containing protein -
  AM398_RS06910 (AM398_06865) - 1338390..1339274 (-) 885 WP_001116795.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=195029 AM398_RS06880 WP_001186774.1 1334298..1334774(-) (radC) [Escherichia coli strain AR_0151]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=195029 AM398_RS06880 WP_001186774.1 1334298..1334774(-) (radC) [Escherichia coli strain AR_0151]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment