Detailed information NTG0194992

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AM437_RS25100
• Genome accession: NZ_CP021689
• Coordinates: 4818538..4819530 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_0058
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4813538..4824530

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM437_RS25080 (AM437_25045)	ygbM	4814176..4814952 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
AM437_RS25085 (AM437_25050)	ygbN	4815041..4816405 (+)	1365	WP_000104433.1	GntP family transporter	-
AM437_RS25090 (AM437_25055)	-	4816548..4817591 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
AM437_RS25095 (AM437_25060)	-	4817816..4818367 (+)	552	WP_001179444.1	flavodoxin family protein	-
AM437_RS25100 (AM437_25065)	rpoS	4818538..4819530 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AM437_RS25105 (AM437_25070)	nlpD	4819593..4820687 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
AM437_RS25110 (AM437_25075)	pcm	4820872..4821498 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AM437_RS25115 (AM437_25080)	surE	4821492..4822253 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AM437_RS25120 (AM437_25085)	truD	4822234..4823283 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
AM437_RS25125 (AM437_25090)	ispF	4823280..4823759 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AM437_RS25130 (AM437_25095)	ispD	4823759..4824469 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=194992 AM437_RS25100 WP_000081550.1 4818538..4819530(-) (rpoS) [Escherichia coli strain AR_0058]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=194992 AM437_RS25100 WP_000081550.1 4818538..4819530(-) (rpoS) [Escherichia coli strain AR_0058]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715