Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   BGL51_RS02260 Genome accession   NZ_CP017064
Coordinates   415689..416132 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 410689..421132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGL51_RS02240 (BGL51_02295) - 411202..411963 (-) 762 WP_064355432.1 NUDIX domain-containing protein -
  BGL51_RS02245 (BGL51_02300) - 412027..413133 (-) 1107 WP_014608024.1 AAA family ATPase -
  BGL51_RS02250 (BGL51_02305) gdhA 413477..414829 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  BGL51_RS02255 (BGL51_02310) - 415088..415498 (+) 411 WP_011680804.1 peptide deformylase -
  BGL51_RS02260 (BGL51_02315) rcrR 415689..416132 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  BGL51_RS02265 (BGL51_02320) rcrP 416136..417950 (+) 1815 WP_095559251.1 ABC transporter ATP-binding protein Regulator
  BGL51_RS02270 (BGL51_02325) rcrQ 417940..419718 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  BGL51_RS02275 (BGL51_02330) - 419874..420131 (+) 258 WP_224107491.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=194962 BGL51_RS02260 WP_002945408.1 415689..416132(+) (rcrR) [Streptococcus thermophilus strain ST3]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=194962 BGL51_RS02260 WP_002945408.1 415689..416132(+) (rcrR) [Streptococcus thermophilus strain ST3]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment