Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | AM437_RS08735 | Genome accession | NZ_CP021689 |
| Coordinates | 1705216..1705692 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186775.1 | Uniprot ID | A7ZVJ5 |
| Organism | Escherichia coli strain AR_0058 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1700216..1710692
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM437_RS08705 (AM437_08670) | cah | 1700337..1703183 (+) | 2847 | WP_021526504.1 | calcium-binding autotransporter Cah | - |
| AM437_RS08710 (AM437_08675) | - | 1703254..1703449 (+) | 196 | Protein_1592 | DUF905 family protein | - |
| AM437_RS08720 (AM437_08685) | - | 1703567..1704385 (+) | 819 | WP_001234738.1 | DUF932 domain-containing protein | - |
| AM437_RS08730 (AM437_08695) | - | 1704727..1705200 (+) | 474 | WP_001350782.1 | antirestriction protein | - |
| AM437_RS08735 (AM437_08700) | radC | 1705216..1705692 (+) | 477 | WP_001186775.1 | RadC family protein | Machinery gene |
| AM437_RS08740 (AM437_08705) | - | 1705755..1705976 (+) | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| AM437_RS08750 (AM437_08715) | - | 1706139..1706507 (+) | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| AM437_RS08755 (AM437_08720) | - | 1706597..1706974 (+) | 378 | WP_000854759.1 | TA system toxin CbtA family protein | - |
| AM437_RS08760 (AM437_08725) | - | 1706971..1707459 (+) | 489 | WP_000761690.1 | DUF5983 family protein | - |
| AM437_RS08765 (AM437_08730) | - | 1707476..1707652 (+) | 177 | WP_000839286.1 | DUF957 domain-containing protein | - |
| AM437_RS26860 | - | 1707758..1707907 (+) | 150 | Protein_1601 | hypothetical protein | - |
| AM437_RS27850 | - | 1707877..1708011 (+) | 135 | Protein_1602 | transcriptional regulator | - |
| AM437_RS27775 | - | 1708274..1708579 (+) | 306 | Protein_1603 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17687.30 Da Isoelectric Point: 7.1437
>NTDB_id=194952 AM437_RS08735 WP_001186775.1 1705216..1705692(+) (radC) [Escherichia coli strain AR_0058]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=194952 AM437_RS08735 WP_001186775.1 1705216..1705692(+) (radC) [Escherichia coli strain AR_0058]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |