Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM408_RS24455 Genome accession   NZ_CP021683
Coordinates   4555887..4556555 (+) Length   222 a.a.
NCBI ID   WP_001336353.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0162     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4550887..4561555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM408_RS24420 (AM408_24315) yicC 4550907..4551770 (-) 864 WP_000621340.1 YicC/YloC family endoribonuclease -
  AM408_RS24430 (AM408_24325) rph 4551897..4552613 (+) 717 WP_001247093.1 ribonuclease PH -
  AM408_RS24435 (AM408_24330) pyrE 4552678..4553319 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  AM408_RS24440 (AM408_24335) slmA 4553356..4553952 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  AM408_RS24445 (AM408_24340) dut 4554059..4554517 (-) 459 WP_000976070.1 dUTP diphosphatase -
  AM408_RS24450 (AM408_24345) coaBC 4554495..4555715 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AM408_RS24455 (AM408_24350) radC 4555887..4556555 (+) 669 WP_001336353.1 DNA repair protein RadC Machinery gene
  AM408_RS24460 (AM408_24355) rpmB 4556772..4557008 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  AM408_RS24465 (AM408_24360) rpmG 4557029..4557196 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  AM408_RS24470 (AM408_24365) mutM 4557294..4558103 (+) 810 WP_001114529.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  AM408_RS24475 (AM408_24370) coaD 4558142..4558621 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  AM408_RS24480 (AM408_24375) waaA 4558629..4559906 (-) 1278 WP_000891566.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  AM408_RS24485 (AM408_24380) rfaQ 4560313..4561383 (+) 1071 WP_001311221.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25290.41 Da        Isoelectric Point: 7.8777

>NTDB_id=194907 AM408_RS24455 WP_001336353.1 4555887..4556555(+) (radC) [Escherichia coli strain AR_0162]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHCRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=194907 AM408_RS24455 WP_001336353.1 4555887..4556555(+) (radC) [Escherichia coli strain AR_0162]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATTGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGTTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment