Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AM408_RS19570 | Genome accession | NZ_CP021683 |
| Coordinates | 3585130..3585570 (+) | Length | 146 a.a. |
| NCBI ID | WP_000360904.1 | Uniprot ID | P36647 |
| Organism | Escherichia coli strain AR_0162 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3580130..3590570
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM408_RS19545 (AM408_19460) | aroP | 3581128..3582501 (+) | 1374 | WP_000969915.1 | aromatic amino acid transporter AroP | - |
| AM408_RS19550 (AM408_19465) | ampE | 3582544..3583398 (-) | 855 | WP_000172005.1 | beta-lactamase regulator AmpE | - |
| AM408_RS19555 (AM408_19470) | ampD | 3583395..3583946 (-) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AM408_RS19560 (AM408_19475) | nadC | 3584034..3584927 (+) | 894 | WP_001135174.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AM408_RS19570 (AM408_19485) | pilA | 3585130..3585570 (+) | 441 | WP_000360904.1 | prepilin peptidase-dependent pilin | Machinery gene |
| AM408_RS19575 (AM408_19490) | pilB | 3585580..3586965 (+) | 1386 | WP_001025146.1 | type II secretion system protein GspE | Machinery gene |
| AM408_RS19580 (AM408_19495) | hofC | 3586955..3588157 (+) | 1203 | WP_000157266.1 | protein transport protein HofC | - |
| AM408_RS19585 (AM408_19500) | guaC | 3588192..3589235 (-) | 1044 | WP_001217338.1 | GMP reductase | - |
| AM408_RS26850 | - | 3589391..3589435 (-) | 45 | WP_120795372.1 | protein YacM | - |
| AM408_RS19590 (AM408_19505) | coaE | 3589460..3590080 (+) | 621 | WP_001269520.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15621.75 Da Isoelectric Point: 4.3938
>NTDB_id=194883 AM408_RS19570 WP_000360904.1 3585130..3585570(+) (pilA) [Escherichia coli strain AR_0162]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=194883 AM408_RS19570 WP_000360904.1 3585130..3585570(+) (pilA) [Escherichia coli strain AR_0162]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |