Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FORC47_RS22195 Genome accession   NZ_CP017060
Coordinates   4217692..4218438 (-) Length   248 a.a.
NCBI ID   WP_000487009.1    Uniprot ID   -
Organism   Bacillus cereus strain FORC_047     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4212692..4223438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC47_RS22170 (FORC47_4227) dnaG 4213454..4215250 (-) 1797 WP_000528221.1 DNA primase -
  FORC47_RS30970 (FORC47_4228) - 4215332..4215475 (-) 144 WP_000479733.1 hypothetical protein -
  FORC47_RS22185 (FORC47_4230) - 4216111..4216923 (-) 813 WP_000368944.1 pyruvate, water dikinase regulatory protein -
  FORC47_RS22190 - 4216953..4217584 (-) 632 Protein_4192 helix-turn-helix transcriptional regulator -
  FORC47_RS22195 (FORC47_4233) recO 4217692..4218438 (-) 747 WP_000487009.1 DNA repair protein RecO Machinery gene
  FORC47_RS22200 (FORC47_4234) - 4218472..4218615 (-) 144 WP_000883924.1 YqzL family protein -
  FORC47_RS22205 (FORC47_4235) era 4218792..4219697 (-) 906 WP_001080230.1 GTPase Era -
  FORC47_RS22210 (FORC47_4236) - 4219690..4220088 (-) 399 WP_089171769.1 cytidine deaminase -
  FORC47_RS22215 - 4220188..4220541 (-) 354 WP_000715464.1 diacylglycerol kinase family protein -
  FORC47_RS22220 (FORC47_4238) ybeY 4220538..4221008 (-) 471 WP_089171770.1 rRNA maturation RNase YbeY -
  FORC47_RS22225 (FORC47_4239) - 4221005..4223149 (-) 2145 WP_000091513.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28618.21 Da        Isoelectric Point: 8.0566

>NTDB_id=194881 FORC47_RS22195 WP_000487009.1 4217692..4218438(-) (recO) [Bacillus cereus strain FORC_047]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=194881 FORC47_RS22195 WP_000487009.1 4217692..4218438(-) (recO) [Bacillus cereus strain FORC_047]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTTATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTGTTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTAAGGGAAGGCGGTTTTCTGTGCTCACGCCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment