Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FORC47_RS12195 Genome accession   NZ_CP017060
Coordinates   2311455..2311733 (+) Length   92 a.a.
NCBI ID   WP_089171004.1    Uniprot ID   -
Organism   Bacillus cereus strain FORC_047     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2306455..2316733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC47_RS12170 (FORC47_2261) - 2307246..2307848 (+) 603 WP_088115306.1 hypothetical protein -
  FORC47_RS12175 (FORC47_2262) - 2308153..2309334 (+) 1182 WP_157676082.1 agmatine deiminase family protein -
  FORC47_RS12185 (FORC47_2264) - 2309808..2310059 (-) 252 WP_000827555.1 response regulator transcription factor -
  FORC47_RS12190 (FORC47_2265) - 2310436..2311314 (+) 879 WP_000397972.1 helix-turn-helix domain-containing protein -
  FORC47_RS12195 (FORC47_2266) abrB 2311455..2311733 (+) 279 WP_089171004.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FORC47_RS12200 (FORC47_2267) - 2312198..2313448 (+) 1251 WP_071729958.1 hypothetical protein -
  FORC47_RS12205 (FORC47_2268) - 2313516..2314274 (+) 759 WP_029442323.1 TSUP family transporter -
  FORC47_RS12210 (FORC47_2269) - 2314527..2315186 (+) 660 WP_000876934.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10392.30 Da        Isoelectric Point: 10.0092

>NTDB_id=194869 FORC47_RS12195 WP_089171004.1 2311455..2311733(+) (abrB) [Bacillus cereus strain FORC_047]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIISPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=194869 FORC47_RS12195 WP_089171004.1 2311455..2311733(+) (abrB) [Bacillus cereus strain FORC_047]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCACCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTATAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment