Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FORC47_RS09995 Genome accession   NZ_CP017060
Coordinates   1901214..1901501 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain FORC_047     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1896214..1906501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC47_RS09975 (FORC47_1828) - 1897387..1897584 (+) 198 WP_002183486.1 DUF4083 domain-containing protein -
  FORC47_RS09980 (FORC47_1829) - 1897616..1898077 (+) 462 WP_000024992.1 NUDIX hydrolase -
  FORC47_RS09985 (FORC47_1830) nadE 1898127..1898945 (-) 819 WP_089170839.1 ammonia-dependent NAD(+) synthetase -
  FORC47_RS09990 (FORC47_1831) - 1899216..1901096 (+) 1881 WP_089170840.1 FtsX-like permease family protein -
  FORC47_RS09995 (FORC47_1832) abrB 1901214..1901501 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FORC47_RS10000 (FORC47_1833) - 1901777..1902724 (+) 948 WP_000099763.1 S8 family peptidase -
  FORC47_RS10005 (FORC47_1834) - 1902764..1903072 (-) 309 WP_001259903.1 ArsR/SmtB family transcription factor -
  FORC47_RS10010 (FORC47_1835) - 1903179..1904114 (+) 936 WP_089170841.1 aldo/keto reductase -
  FORC47_RS10015 (FORC47_1836) - 1904162..1905337 (+) 1176 WP_061661205.1 MFS transporter -
  FORC47_RS10020 (FORC47_1837) - 1905632..1905856 (-) 225 WP_000162602.1 hypothetical protein -
  FORC47_RS10025 (FORC47_1838) - 1905941..1906288 (-) 348 WP_000426321.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=194867 FORC47_RS09995 WP_000648324.1 1901214..1901501(+) (abrB) [Bacillus cereus strain FORC_047]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=194867 FORC47_RS09995 WP_000648324.1 1901214..1901501(+) (abrB) [Bacillus cereus strain FORC_047]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGCCGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment