Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FORC47_RS08030 Genome accession   NZ_CP017060
Coordinates   1515513..1516115 (-) Length   200 a.a.
NCBI ID   WP_089170711.1    Uniprot ID   -
Organism   Bacillus cereus strain FORC_047     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1510513..1521115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC47_RS08010 (FORC47_1437) dnaD 1510826..1511533 (+) 708 WP_089170708.1 DNA replication protein DnaD -
  FORC47_RS08015 (FORC47_1438) nth 1511549..1512196 (+) 648 WP_000933035.1 endonuclease III -
  FORC47_RS08020 (FORC47_1439) - 1512200..1512718 (+) 519 WP_089170709.1 YpoC family protein -
  FORC47_RS08025 (FORC47_1440) - 1512744..1515446 (-) 2703 WP_089170710.1 PBP1A family penicillin-binding protein -
  FORC47_RS08030 (FORC47_1441) recU 1515513..1516115 (-) 603 WP_089170711.1 Holliday junction resolvase RecU Machinery gene
  FORC47_RS08035 (FORC47_1442) - 1516219..1517244 (+) 1026 WP_089170712.1 DUF2515 domain-containing protein -
  FORC47_RS31520 - 1517396..1517575 (-) 180 WP_001987054.1 hypothetical protein -
  FORC47_RS08045 (FORC47_1443) - 1517661..1517903 (+) 243 WP_001252036.1 hypothetical protein -
  FORC47_RS08050 (FORC47_1444) - 1517919..1518263 (+) 345 WP_089170713.1 YppE family protein -
  FORC47_RS08055 (FORC47_1445) - 1518290..1518481 (-) 192 WP_000242652.1 YppF family protein -
  FORC47_RS08060 (FORC47_1446) - 1518659..1519216 (+) 558 WP_000487718.1 YppG family protein -
  FORC47_RS08065 (FORC47_1447) - 1519373..1519795 (+) 423 WP_000546292.1 CotD family spore coat protein -
  FORC47_RS08070 (FORC47_1448) - 1519852..1520406 (+) 555 WP_089170714.1 DUF1273 domain-containing protein -
  FORC47_RS08075 (FORC47_1449) gpsB 1520504..1520839 (+) 336 WP_089170715.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.56 Da        Isoelectric Point: 9.4336

>NTDB_id=194866 FORC47_RS08030 WP_089170711.1 1515513..1516115(-) (recU) [Bacillus cereus strain FORC_047]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIITFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=194866 FORC47_RS08030 WP_089170711.1 1515513..1516115(-) (recU) [Bacillus cereus strain FORC_047]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACGACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATAGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTCATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTACATTTTGGAATCGTCAA
AATACAGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment