Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   FORC47_RS06665 Genome accession   NZ_CP017060
Coordinates   1272929..1273252 (-) Length   107 a.a.
NCBI ID   WP_000578866.1    Uniprot ID   A0A9X6QKV7
Organism   Bacillus cereus strain FORC_047     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1267929..1278252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC47_RS06640 (FORC47_1173) - 1268265..1269551 (+) 1287 WP_089170653.1 D-alanyl-D-alanine carboxypeptidase family protein -
  FORC47_RS06645 (FORC47_1174) sipW 1269754..1270323 (+) 570 WP_000767792.1 signal peptidase I SipW -
  FORC47_RS06650 (FORC47_1175) - 1270384..1270971 (+) 588 WP_000172852.1 CalY family protein -
  FORC47_RS06655 (FORC47_1176) - 1271106..1271876 (+) 771 WP_157676048.1 DUF4047 domain-containing protein -
  FORC47_RS06660 (FORC47_1177) calY 1272262..1272855 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  FORC47_RS06665 (FORC47_1178) sinR 1272929..1273252 (-) 324 WP_000578866.1 helix-turn-helix domain-containing protein Regulator
  FORC47_RS06670 (FORC47_1179) - 1273332..1273466 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  FORC47_RS06675 (FORC47_1180) inhA1 1273809..1276196 (+) 2388 WP_089170655.1 M6 family metalloprotease immune inhibitor InhA1 -
  FORC47_RS06680 (FORC47_1181) - 1276368..1277735 (+) 1368 WP_089170656.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12376.26 Da        Isoelectric Point: 9.9412

>NTDB_id=194864 FORC47_RS06665 WP_000578866.1 1272929..1273252(-) (sinR) [Bacillus cereus strain FORC_047]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDEKTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=194864 FORC47_RS06665 WP_000578866.1 1272929..1273252(-) (sinR) [Bacillus cereus strain FORC_047]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAAAAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment