Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM408_RS08830 Genome accession   NZ_CP021683
Coordinates   1538730..1539206 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0162     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1533730..1544206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM408_RS08790 (AM408_08740) tmaR 1534869..1535198 (+) 330 WP_000450409.1 DUF496 family protein -
  AM408_RS27130 (AM408_08745) - 1535299..1535664 (-) 366 WP_223350516.1 EutP/PduV family microcompartment system protein -
  AM408_RS26785 - 1535935..1536306 (-) 372 WP_001295631.1 IS110 family transposase -
  AM408_RS26420 - 1537122..1537202 (-) 81 Protein_1441 hypothetical protein -
  AM408_RS08805 (AM408_08755) - 1537302..1537451 (-) 150 Protein_1442 DUF5983 family protein -
  AM408_RS08810 (AM408_08760) - 1537448..1537825 (-) 378 WP_000854752.1 TA system toxin CbtA family protein -
  AM408_RS08815 (AM408_08765) cbeA 1537915..1538283 (-) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  AM408_RS08825 (AM408_08775) yeeT 1538446..1538667 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  AM408_RS08830 (AM408_08780) radC 1538730..1539206 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  AM408_RS08835 (AM408_08785) istA 1539420..1540961 (+) 1542 WP_002431311.1 IS21-like element ISEc12 family transposase -
  AM408_RS08840 (AM408_08790) istB 1540976..1541722 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  AM408_RS08845 (AM408_08795) - 1541808..1542281 (-) 474 WP_000855059.1 antirestriction protein -
  AM408_RS08855 (AM408_08805) - 1542623..1543441 (-) 819 WP_074527539.1 DUF932 domain-containing protein -
  AM408_RS08865 (AM408_08815) - 1543559..1543754 (-) 196 Protein_1451 DUF905 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=194858 AM408_RS08830 WP_001186774.1 1538730..1539206(-) (radC) [Escherichia coli strain AR_0162]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=194858 AM408_RS08830 WP_001186774.1 1538730..1539206(-) (radC) [Escherichia coli strain AR_0162]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment