Detailed information NTG0194844

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AM408_RS05220
• Genome accession: NZ_CP021683
• Coordinates: 791777..792769 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_0162
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 786777..797769

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM408_RS05190 (AM408_05140)	ispD	786838..787548 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AM408_RS05195 (AM408_05145)	ispF	787548..788027 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AM408_RS05200 (AM408_05150)	truD	788024..789073 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AM408_RS05205 (AM408_05155)	surE	789054..789815 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AM408_RS05210 (AM408_05160)	pcm	789809..790435 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AM408_RS05215 (AM408_05165)	nlpD	790620..791714 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AM408_RS05220 (AM408_05170)	rpoS	791777..792769 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AM408_RS05225 (AM408_05175)	ygbN	792863..794227 (-)	1365	WP_000104441.1	GntP family transporter	-
AM408_RS05230 (AM408_05180)	ygbM	794316..795092 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
AM408_RS05235 (AM408_05185)	ygbL	795097..795735 (-)	639	WP_001278994.1	aldolase	-
AM408_RS05240 (AM408_05190)	otnK	795732..796994 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=194844 AM408_RS05220 WP_000081550.1 791777..792769(+) (rpoS) [Escherichia coli strain AR_0162]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=194844 AM408_RS05220 WP_000081550.1 791777..792769(+) (rpoS) [Escherichia coli strain AR_0162]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715