Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   S100027_RS18655 Genome accession   NZ_CP021677
Coordinates   3538168..3540498 (-) Length   776 a.a.
NCBI ID   WP_071583689.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM100027     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3533168..3545498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100027_RS18635 (S100027_03742) - 3534492..3535331 (-) 840 WP_003185195.1 aldo/keto reductase -
  S100027_RS18640 (S100027_03743) - 3535421..3536281 (-) 861 WP_003185197.1 ROK family protein -
  S100027_RS18645 (S100027_03744) - 3536548..3537672 (+) 1125 WP_011198281.1 aminotransferase class V-fold PLP-dependent enzyme -
  S100027_RS18650 (S100027_03745) - 3537752..3538162 (+) 411 WP_003185200.1 DUF5412 domain-containing protein -
  S100027_RS18655 (S100027_03746) helD 3538168..3540498 (-) 2331 WP_071583689.1 RNA polymerase recycling motor HelD Machinery gene
  S100027_RS18660 (S100027_03747) - 3540677..3541285 (-) 609 WP_003185205.1 trimeric intracellular cation channel family protein -
  S100027_RS18665 (S100027_03748) - 3541410..3541894 (+) 485 Protein_3628 GrpB family protein -
  S100027_RS18670 (S100027_03750) - 3542033..3542518 (-) 486 WP_009329580.1 GNAT family N-acetyltransferase -
  S100027_RS18675 (S100027_03751) - 3542625..3543038 (-) 414 WP_003185211.1 disulfide oxidoreductase -
  S100027_RS18680 (S100027_03752) - 3543028..3543723 (-) 696 WP_003185213.1 DsbA family protein -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 90000.86 Da        Isoelectric Point: 6.9643

>NTDB_id=194806 S100027_RS18655 WP_071583689.1 3538168..3540498(-) (helD) [Bacillus licheniformis strain SRCM100027]
MQENGQEWLEEEKRIRLVLKELDQKLHSLKGKTGGLKEDIIDLRKHFWCDVTVNIADENEAVETFFSIKQQAEVLAERER
SHKQFYSQLKNLLKVKESPYFGRVDFLEDGEENAESVYIGLASLMYEKEERFLIYDWRAPISSLFYNYGPGAAQYEVPDE
TVRGTIELKRQFLFKNGQLKAMFNTDMAIGDEVLQEVLGQQADIQMKSIVATIQKEQNQIIRNEKSRFLIVRGAAGSGKT
SAALQRAAYLLYRGRGQIESSQMLLFSPNLLFNSYVANVLPELGEENIQQTTFQEFVARRLGKQVPCETPFDQLEYCLTA
SDGEEQRIRMKSIELKSSLAFKGIIDDYVKYLAKGHLVFKHITFRGKRIITSGQMRKFFAALDHSDTLSNRIEQTGKWLL
QLLNKYERQERKKDWVIEESELLDKEEYLKAYKRLQEEQRFTENTFDDYERERNLLASIVAEREFKPLKQVVKAFGFIDF
KGTYLQLFSGRYTPQTRPDDWQSICTFTQKSFRFEKLLYEDAVPFLYMKNKLKGGGKNTAIRHLFIDEAQDYTPFQLAFL
ESLFPACSITMLGDLNQAILAHAYHDKTLLSGGVFEGEKTEIITLKRSYRSTKEIVELTKRIIEGGEEIEAFNRNGKKPT
LTISADPHAHHKEMASLMTALQKEGLETIAVICKTVRECRDAFQHLQQHAELKLIDKETRTFQKGVVVIPVYLAKGIEFD
AVIIYDASEKQYKKERERTLFYTACTRAMHELHLFSIGKETHFLNGVPNDMYTRRE

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=194806 S100027_RS18655 WP_071583689.1 3538168..3540498(-) (helD) [Bacillus licheniformis strain SRCM100027]
GTGCAGGAAAACGGTCAGGAATGGCTGGAAGAGGAAAAACGAATCCGGCTTGTTTTAAAGGAATTGGATCAAAAGCTTCA
TTCTCTAAAGGGAAAAACCGGCGGATTGAAGGAGGATATCATCGATTTACGGAAACATTTTTGGTGCGATGTCACCGTAA
ACATAGCCGATGAAAATGAAGCGGTTGAAACATTTTTTAGCATTAAACAGCAGGCTGAGGTTTTGGCTGAGAGGGAAAGG
AGCCATAAGCAGTTTTACAGCCAGCTGAAAAACCTGTTAAAAGTGAAAGAATCGCCTTATTTCGGCCGCGTAGATTTTTT
GGAGGACGGCGAAGAAAACGCTGAGTCCGTCTACATCGGACTCGCCTCTTTAATGTATGAAAAAGAAGAGCGGTTTTTGA
TCTATGATTGGAGAGCGCCGATTTCCAGTCTGTTCTATAACTATGGACCCGGCGCGGCTCAATACGAAGTTCCGGACGAG
ACGGTCAGGGGAACGATTGAGCTGAAAAGGCAATTTCTCTTCAAAAACGGACAGCTGAAAGCGATGTTTAATACGGATAT
GGCGATTGGGGATGAAGTCCTTCAGGAAGTGCTGGGGCAGCAGGCCGATATCCAGATGAAAAGCATCGTCGCGACGATTC
AAAAAGAACAGAATCAGATCATTCGGAACGAAAAGAGCCGCTTTTTAATTGTTCGGGGAGCGGCTGGCAGCGGAAAAACG
TCGGCGGCATTGCAGCGGGCCGCATATTTGCTGTACCGCGGCCGCGGGCAGATCGAGTCGAGCCAGATGCTGCTATTCTC
TCCAAACCTGCTTTTTAACAGCTATGTCGCCAATGTTCTGCCTGAGCTCGGAGAGGAAAACATCCAGCAGACGACGTTCC
AGGAATTTGTAGCGCGCCGCCTTGGAAAGCAGGTACCATGCGAGACTCCGTTCGATCAGCTTGAATATTGTTTAACCGCT
TCAGACGGTGAGGAGCAGCGCATCCGGATGAAATCGATTGAATTGAAATCCAGTCTGGCTTTCAAAGGCATCATCGATGA
TTACGTCAAATATTTGGCAAAAGGGCACCTGGTGTTTAAACATATCACCTTTCGCGGAAAAAGGATCATCACAAGCGGTC
AGATGCGGAAATTTTTCGCGGCCCTTGATCATTCAGACACGCTGTCCAACCGGATTGAACAAACGGGAAAATGGCTGTTG
CAGCTCCTGAATAAATATGAACGCCAGGAAAGAAAAAAAGACTGGGTCATCGAAGAAAGCGAGCTGCTGGATAAAGAGGA
ATACTTAAAGGCTTATAAACGTCTTCAGGAGGAACAGCGCTTTACGGAGAATACGTTTGACGATTATGAAAGGGAGCGAA
ACCTCCTTGCCTCCATCGTTGCCGAAAGGGAGTTCAAGCCGCTCAAGCAAGTGGTAAAAGCGTTCGGCTTTATTGATTTT
AAAGGAACATACCTTCAGCTTTTTTCCGGACGCTATACCCCGCAAACGCGCCCTGATGACTGGCAGAGCATTTGCACATT
CACTCAGAAAAGCTTTCGTTTTGAGAAGCTGCTTTATGAAGATGCCGTCCCTTTTTTATATATGAAAAACAAGCTGAAAG
GCGGGGGGAAAAACACGGCAATCCGCCATTTATTCATTGATGAAGCCCAGGATTACACGCCTTTTCAACTTGCTTTTTTG
GAGAGCTTGTTTCCCGCGTGCAGCATCACGATGCTGGGAGACTTAAACCAGGCGATTCTTGCCCATGCCTATCACGATAA
GACGCTTCTGTCGGGAGGCGTGTTTGAAGGCGAAAAAACGGAGATCATCACCTTGAAGCGCAGCTACAGGTCGACGAAAG
AAATTGTTGAATTGACAAAGCGCATCATCGAAGGGGGCGAAGAGATCGAAGCTTTTAATAGGAACGGCAAAAAACCGACT
TTGACAATATCAGCCGATCCTCATGCACACCATAAAGAGATGGCTTCCCTTATGACCGCCCTTCAAAAAGAAGGACTTGA
GACGATTGCAGTCATCTGTAAAACAGTCCGGGAATGCAGGGATGCGTTCCAGCATCTTCAGCAGCATGCAGAGCTTAAAC
TGATCGATAAAGAAACGAGAACGTTTCAAAAAGGCGTGGTCGTCATTCCCGTCTATTTGGCGAAAGGGATCGAATTTGAT
GCCGTCATCATTTATGACGCTTCTGAAAAGCAATACAAAAAGGAAAGAGAGCGGACTTTATTTTATACGGCGTGCACGAG
GGCGATGCATGAGCTGCACCTCTTTTCCATTGGAAAAGAAACGCATTTTTTAAACGGCGTCCCAAATGATATGTACACGA
GAAGAGAGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(217-580)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(706-754)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

56.347

99.485

0.561