Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   BCS37_RS12015 Genome accession   NZ_CP017042
Coordinates   1936474..1936593 (+) Length   39 a.a.
NCBI ID   WP_107528589.1    Uniprot ID   -
Organism   Selenomonas sp. oral taxon 920 strain W5150     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1931474..1941593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCS37_RS09345 (BCS37_09345) - 1936051..1936452 (+) 402 WP_006690190.1 thioesterase family protein -
  BCS37_RS12015 HI0659 1936474..1936593 (+) 120 WP_107528589.1 helix-turn-helix transcriptional regulator Machinery gene

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4202.92 Da        Isoelectric Point: 9.1413

>NTDB_id=194750 BCS37_RS12015 WP_107528589.1 1936474..1936593(+) (HI0659) [Selenomonas sp. oral taxon 920 strain W5150]
MSGVTQPVISRVEQGTTNPNIATIQLLVSLGKELRQPLL

Nucleotide


Download         Length: 120 bp        

>NTDB_id=194750 BCS37_RS12015 WP_107528589.1 1936474..1936593(+) (HI0659) [Selenomonas sp. oral taxon 920 strain W5150]
ATGAGCGGCGTGACACAGCCCGTCATCTCCCGCGTTGAGCAGGGCACGACAAACCCGAACATTGCGACGATCCAGCTCCT
CGTCTCACTTGGGAAAGAGCTCCGACAGCCCCTGCTCTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(1-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

54.286

89.744

0.487

Multiple sequence alignment