Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   MTVDSCj16_RS03455 Genome accession   NZ_CP017033
Coordinates   618247..618897 (-) Length   216 a.a.
NCBI ID   WP_069360530.1    Uniprot ID   A0A5T0F4I4
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj16     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 613247..623897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj16_RS03420 (MTVDSCj16_0680) - 613626..614630 (+) 1005 WP_079460636.1 hypothetical protein -
  MTVDSCj16_RS03425 (MTVDSCj16_0681) tlyA 614627..615388 (+) 762 WP_002868894.1 TlyA family RNA methyltransferase -
  MTVDSCj16_RS03430 (MTVDSCj16_0682) ribF 615354..616208 (+) 855 WP_069360529.1 bifunctional riboflavin kinase/FAD synthetase -
  MTVDSCj16_RS03435 (MTVDSCj16_0683) cmoA 616195..616905 (+) 711 WP_079462098.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  MTVDSCj16_RS03440 (MTVDSCj16_0684) - 616895..617115 (-) 221 Protein_661 EexN family lipoprotein -
  MTVDSCj16_RS03445 (MTVDSCj16_0685) - 617112..617546 (-) 435 WP_002872584.1 EexN family lipoprotein -
  MTVDSCj16_RS03450 (MTVDSCj16_0686) - 617604..618236 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  MTVDSCj16_RS03455 (MTVDSCj16_0687) CJE0566 618247..618897 (-) 651 WP_069360530.1 DNA/RNA non-specific endonuclease Regulator
  MTVDSCj16_RS03460 (MTVDSCj16_0688) nth 618894..619520 (-) 627 WP_002866467.1 endonuclease III -
  MTVDSCj16_RS03465 (MTVDSCj16_0689) peb4 619601..620422 (+) 822 WP_069360531.1 peptidylprolyl isomerase PEB4 -
  MTVDSCj16_RS03470 (MTVDSCj16_0690) fbaA 620422..621486 (+) 1065 WP_052795305.1 class II fructose-bisphosphate aldolase -
  MTVDSCj16_RS03475 (MTVDSCj16_0691) - 621581..623023 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25414.06 Da        Isoelectric Point: 9.6509

>NTDB_id=194701 MTVDSCj16_RS03455 WP_069360530.1 618247..618897(-) (CJE0566) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=194701 MTVDSCj16_RS03455 WP_069360530.1 618247..618897(-) (CJE0566) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAAGTAGAGGCTTCAAATTTGAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0F4I4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment