Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   CJ14980A_RS07440 Genome accession   NZ_CP017029
Coordinates   1461611..1462792 (-) Length   393 a.a.
NCBI ID   WP_069176619.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 14980A     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1456611..1467792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ14980A_RS07410 (CJ14980A_1448) - 1457155..1457496 (+) 342 WP_002851191.1 hypothetical protein -
  CJ14980A_RS07415 (CJ14980A_1449) flgM 1457559..1457756 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  CJ14980A_RS07420 (CJ14980A_1450) - 1457799..1458233 (+) 435 WP_002779263.1 flagellar protein FlgN -
  CJ14980A_RS07425 (CJ14980A_1451) flgK 1458243..1460069 (+) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  CJ14980A_RS07430 (CJ14980A_1452) - 1460086..1460850 (+) 765 WP_052786571.1 TIGR02757 family protein -
  CJ14980A_RS07435 (CJ14980A_1453) - 1460854..1461618 (+) 765 WP_002855821.1 TSUP family transporter -
  CJ14980A_RS07440 (CJ14980A_1454) ctsF 1461611..1462792 (-) 1182 WP_069176619.1 type II secretion system F family protein Machinery gene
  CJ14980A_RS07445 (CJ14980A_1455) ctsE 1462789..1464348 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  CJ14980A_RS07450 (CJ14980A_1456) ctsX 1464338..1464925 (-) 588 WP_002851370.1 membrane protein Machinery gene
  CJ14980A_RS07455 (CJ14980A_1457) ctsP 1464929..1465537 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CJ14980A_RS07460 (CJ14980A_1458) ctsD 1465530..1466942 (-) 1413 WP_044260333.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CJ14980A_RS07465 (CJ14980A_1459) ctsR 1466920..1467231 (-) 312 WP_002880445.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45773.36 Da        Isoelectric Point: 9.0943

>NTDB_id=194636 CJ14980A_RS07440 WP_069176619.1 1461611..1462792(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain 14980A]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSHAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=194636 CJ14980A_RS07440 WP_069176619.1 1461611..1462792(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain 14980A]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCATGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment