Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   S100141_RS11975 Genome accession   NZ_CP021669
Coordinates   2210893..2211642 (-) Length   249 a.a.
NCBI ID   WP_003184052.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM100141     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2205893..2216642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100141_RS11945 (S100141_02407) - 2206096..2206539 (+) 444 WP_048355991.1 helix-turn-helix domain-containing protein -
  S100141_RS11950 (S100141_02408) - 2206643..2207050 (+) 408 WP_225315941.1 ImmA/IrrE family metallo-endopeptidase -
  S100141_RS11955 (S100141_02409) - 2207090..2208478 (+) 1389 WP_080626969.1 recombinase family protein -
  S100141_RS11960 (S100141_02410) - 2208494..2208877 (-) 384 Protein_2360 UPF0758 domain-containing protein -
  S100141_RS11965 (S100141_02411) - 2208932..2209504 (-) 573 WP_003184048.1 Maf family protein -
  S100141_RS11970 (S100141_02412) - 2209658..2210689 (-) 1032 WP_003184050.1 SPOR domain-containing protein -
  S100141_RS11975 (S100141_02413) comC 2210893..2211642 (-) 750 WP_003184052.1 prepilin peptidase Machinery gene
  S100141_RS11980 (S100141_02414) - 2211785..2213083 (-) 1299 WP_009329287.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  S100141_RS11985 (S100141_02415) - 2213165..2215807 (-) 2643 WP_003184055.1 valine--tRNA ligase -
  S100141_RS11990 (S100141_02416) - 2216269..2216460 (+) 192 WP_003184058.1 hypothetical protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26944.49 Da        Isoelectric Point: 8.7373

>NTDB_id=194631 S100141_RS11975 WP_003184052.1 2210893..2211642(-) (comC) [Bacillus licheniformis strain SRCM100141]
MFIFYLFTAGLVLGSFFNSAGRRISEKISLIAPRSLCRVCKRQLGFSELIPVLSYLMQRGRCKGCQTPLSIVYPAVELSA
AILFAFAGMHVGHEGELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGGMLPLL
TLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIALLAGKLKKNEPMPFAPAILAGTLTSCFYGEPMI
EWYLQTAWW

Nucleotide


Download         Length: 750 bp        

>NTDB_id=194631 S100141_RS11975 WP_003184052.1 2210893..2211642(-) (comC) [Bacillus licheniformis strain SRCM100141]
ATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTTTAATTCGGCCGGGCGCCGCATTTCTGAAAA
GATATCATTGATTGCTCCGCGTTCCCTCTGCCGCGTCTGCAAAAGGCAGCTGGGCTTCTCGGAGCTGATACCGGTTTTGT
CCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAACCCCGCTCTCGATCGTGTATCCGGCAGTTGAGCTCTCCGCC
GCCATCCTGTTTGCGTTTGCCGGCATGCACGTTGGGCATGAGGGGGAGCTGGTGATTGTGCTTGCTCTTATATCTCTGCT
TTTGATCGTCTTTGTATCTGATGTGACACACATGATCATTCCGGATGCTGTTCTTTGTTTTTTCCTGCCTGTCTTTGCCG
TCGGACGATTCCTTGTTCCTCTGGAACAGTGGCACTCAAGTTTGAGCGGTGCGATGGCCGGCGGTATGCTGCCCCTCTTG
ACGCTGCTTTTGACGAAAGGGGGGATCGGCTGGGGAGACGTAAAGCTGTTTGCGGTAATCGGCATGGCGCTCGGCAGCCG
CCTCCTCGTTCTCGCTTTTTTCCTCTCGGCAGCCGCAGGAACGGTGCTTGGTCTTATTGCACTCCTGGCAGGCAAACTGA
AGAAAAATGAACCAATGCCGTTTGCTCCCGCGATTCTGGCCGGGACGCTGACGAGCTGCTTCTATGGCGAACCAATGATC
GAGTGGTACCTTCAAACGGCATGGTGGTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(102-205)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

47.934

97.189

0.466