Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BGI23_RS25255 Genome accession   NZ_CP017016
Coordinates   4814941..4816290 (-) Length   449 a.a.
NCBI ID   WP_070807177.1    Uniprot ID   -
Organism   Bacillus sp. ABP14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4809941..4821290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI23_RS25220 (BGI23_25220) - 4809970..4810665 (-) 696 WP_070807174.1 hypothetical protein -
  BGI23_RS25225 (BGI23_25225) - 4810652..4811440 (-) 789 WP_000120066.1 hypothetical protein -
  BGI23_RS25230 (BGI23_25230) - 4811472..4812041 (-) 570 WP_000691998.1 hypothetical protein -
  BGI23_RS25235 (BGI23_25235) - 4812159..4812641 (-) 483 WP_070807175.1 hypothetical protein -
  BGI23_RS25240 (BGI23_25240) hpf 4813050..4813592 (-) 543 WP_000671190.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BGI23_RS25245 (BGI23_25245) cspC 4813913..4814110 (-) 198 WP_001162041.1 cold shock protein CspC -
  BGI23_RS25250 (BGI23_25250) - 4814237..4814941 (-) 705 WP_070807176.1 ComF family protein -
  BGI23_RS25255 (BGI23_25255) comFA 4814941..4816290 (-) 1350 WP_070807177.1 ATP-dependent helicase ComFA Machinery gene
  BGI23_RS25260 (BGI23_25260) - 4816418..4817833 (-) 1416 WP_070807333.1 NlpC/P60 family protein -
  BGI23_RS25265 (BGI23_25265) - 4817982..4818296 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  BGI23_RS25275 (BGI23_25275) - 4818470..4819312 (-) 843 WP_000844764.1 DegV family protein -
  BGI23_RS25280 (BGI23_25280) - 4819552..4820187 (+) 636 WP_000926682.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51127.65 Da        Isoelectric Point: 9.7354

>NTDB_id=194511 BGI23_RS25255 WP_070807177.1 4814941..4816290(-) (comFA) [Bacillus sp. ABP14]
MLAGKQLLLEELSSDLRRELSDLKKKGEVVCVQGITKNTSKYICQRCGNIEKRLFASFLCKRCGKACAYCRKCITMGRVS
ECTVLVRGIHERNGDRELNPLQWNGALSIGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVLELAPRLQEVFPSITVAALYGGSVDHKKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVRQAM
KEKAARIYLTATPDEKWKRNFRKGKQKGVIVSGRYHRHPLPVPLFSWCGNWKKSLHHRKIPRVLLQWLKMNLNKKYPIFL
FVPHVRYIEEISQLLKELDNRIDGVHAEDSMRKEKVASFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVMYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=194511 BGI23_RS25255 WP_070807177.1 4814941..4816290(-) (comFA) [Bacillus sp. ABP14]
ATGCTTGCTGGAAAACAGTTGCTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGATTTGAAAAAGAAGGG
AGAGGTTGTATGTGTACAAGGTATAACAAAGAATACTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGAAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCGGTAAAGCATGCGCGTATTGCCGGAAGTGTATCACGATGGGGAGAGTTAGC
GAATGTACTGTACTTGTTCGCGGGATTCATGAAAGAAACGGAGACAGGGAGCTAAATCCATTACAGTGGAATGGGGCTTT
ATCGATTGGTCAGGAGTTGGCGGCGCAAGGAGTTATAGAAGCGATTAAGCAGAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCGCTCCAAAAAGGAGAAAGGGTTTGTATCGCAACG
CCAAGGACTGACGTTGTACTGGAATTAGCGCCGAGATTACAAGAAGTGTTTCCAAGTATAACTGTAGCTGCTTTATACGG
AGGGAGTGTAGATCATAAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCGTTTC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCAGATCAAATGTTACAGTATGCAGTTAGGCAAGCAATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGTAATTTCAGAAAGGGGAAACAAAA
AGGTGTTATTGTGTCAGGACGATACCATCGTCACCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAGAAAAATTCCTCGCGTGTTACTACAATGGTTAAAAATGAACTTAAACAAAAAGTATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATAAGTCAGTTGTTGAAAGAGTTGGATAATAGAATCGATGGCGTGCATGC
AGAAGATTCGATGAGAAAAGAAAAAGTAGCATCTTTCAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGAGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGAGCTGAAGAAGAAATTTTTTCAGAGAGTGCGCTCGTA
CAAATTGCAGGCCGAGCGGGGCGTAGTTTTGAAGAGCCATATGGTGAGGTTATGTATTTTCATTACGGTAAGACAGAGGC
AATGGTACGTGCGAAAAAACATATTCAAAGTATGAACAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(311-408)

Type III restriction enzyme, res subunit (ResIII)

(110-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.153

93.096

0.486

Multiple sequence alignment