Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BGI23_RS09805 Genome accession   NZ_CP017016
Coordinates   1878087..1878374 (+) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus sp. ABP14     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1873087..1883374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI23_RS09785 (BGI23_09785) - 1874260..1874457 (+) 198 WP_061658198.1 DUF4083 domain-containing protein -
  BGI23_RS09790 (BGI23_09790) - 1874489..1874950 (+) 462 WP_070805819.1 NUDIX hydrolase -
  BGI23_RS09795 (BGI23_09795) nadE 1875000..1875818 (-) 819 WP_070805820.1 ammonia-dependent NAD(+) synthetase -
  BGI23_RS09800 (BGI23_09800) - 1876090..1877970 (+) 1881 WP_070805821.1 FtsX-like permease family protein -
  BGI23_RS09805 (BGI23_09805) abrB 1878087..1878374 (+) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BGI23_RS09810 (BGI23_09810) - 1878649..1879599 (+) 951 WP_070805822.1 serine protease -
  BGI23_RS09815 (BGI23_09815) galT 1879811..1881301 (+) 1491 WP_070805823.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  BGI23_RS09820 (BGI23_09820) - 1881412..1881720 (-) 309 WP_001259915.1 helix-turn-helix transcriptional regulator -
  BGI23_RS09825 (BGI23_09825) - 1881828..1882763 (+) 936 WP_070805824.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=194489 BGI23_RS09805 WP_000648330.1 1878087..1878374(+) (abrB) [Bacillus sp. ABP14]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=194489 BGI23_RS09805 WP_000648330.1 1878087..1878374(+) (abrB) [Bacillus sp. ABP14]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment