Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BGI23_RS07880 Genome accession   NZ_CP017016
Coordinates   1492410..1493012 (-) Length   200 a.a.
NCBI ID   WP_000155592.1    Uniprot ID   A0A0G8BSW4
Organism   Bacillus sp. ABP14     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1487410..1498012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI23_RS07860 (BGI23_07860) dnaD 1487731..1488438 (+) 708 WP_000728538.1 DNA replication protein DnaD -
  BGI23_RS07865 (BGI23_07865) nth 1488454..1489101 (+) 648 WP_000933023.1 endonuclease III -
  BGI23_RS07870 (BGI23_07870) - 1489105..1489623 (+) 519 WP_000442681.1 YpoC family protein -
  BGI23_RS07875 (BGI23_07875) - 1489648..1492344 (-) 2697 WP_070805630.1 PBP1A family penicillin-binding protein -
  BGI23_RS07880 (BGI23_07880) recU 1492410..1493012 (-) 603 WP_000155592.1 Holliday junction resolvase RecU Machinery gene
  BGI23_RS07885 (BGI23_07885) - 1493116..1494141 (+) 1026 WP_070807282.1 DUF2515 domain-containing protein -
  BGI23_RS28360 - 1494265..1494441 (-) 177 WP_002020884.1 hypothetical protein -
  BGI23_RS07890 (BGI23_07890) - 1494527..1494769 (+) 243 WP_001252039.1 hypothetical protein -
  BGI23_RS07895 (BGI23_07895) - 1494785..1495129 (+) 345 WP_070805631.1 YppE family protein -
  BGI23_RS07900 (BGI23_07900) - 1495154..1495345 (-) 192 WP_000242664.1 YppF family protein -
  BGI23_RS07905 (BGI23_07905) - 1495523..1495993 (+) 471 WP_000487707.1 YppG family protein -
  BGI23_RS07910 (BGI23_07910) - 1496149..1496574 (+) 426 WP_000546265.1 CotD family spore coat protein -
  BGI23_RS07915 (BGI23_07915) - 1496631..1497185 (+) 555 WP_000862920.1 DUF1273 domain-containing protein -
  BGI23_RS07920 (BGI23_07920) gpsB 1497283..1497621 (+) 339 WP_000622430.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.61 Da        Isoelectric Point: 9.4277

>NTDB_id=194488 BGI23_RS07880 WP_000155592.1 1492410..1493012(-) (recU) [Bacillus sp. ABP14]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=194488 BGI23_RS07880 WP_000155592.1 1492410..1493012(-) (recU) [Bacillus sp. ABP14]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACGAATGAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACCCCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACGAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAGCATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACAGGTGGAAGAAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8BSW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment