Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BGI23_RS06520 Genome accession   NZ_CP017016
Coordinates   1249759..1250082 (-) Length   107 a.a.
NCBI ID   WP_000578880.1    Uniprot ID   A0A2A7DD22
Organism   Bacillus sp. ABP14     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1244759..1255082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI23_RS06495 (BGI23_06495) - 1245033..1246319 (+) 1287 WP_070805538.1 D-alanyl-D-alanine carboxypeptidase family protein -
  BGI23_RS06500 (BGI23_06500) sipW 1246512..1247081 (+) 570 WP_000767806.1 signal peptidase I SipW -
  BGI23_RS06505 (BGI23_06505) - 1247144..1247731 (+) 588 WP_000172849.1 CalY family protein -
  BGI23_RS06510 (BGI23_06510) - 1247893..1248666 (+) 774 WP_070805539.1 DUF4047 domain-containing protein -
  BGI23_RS06515 (BGI23_06515) calY 1249091..1249684 (+) 594 WP_070805540.1 biofilm matrix protein CalY -
  BGI23_RS06520 (BGI23_06520) sinR 1249759..1250082 (-) 324 WP_000578880.1 helix-turn-helix domain-containing protein Regulator
  BGI23_RS06525 (BGI23_06525) - 1250162..1250296 (-) 135 WP_000276215.1 anti-repressor SinI family protein -
  BGI23_RS06530 (BGI23_06530) inhA1 1250640..1253030 (+) 2391 WP_070805541.1 M6 family metalloprotease immune inhibitor InhA1 -
  BGI23_RS06535 (BGI23_06535) - 1253202..1254569 (+) 1368 WP_070805542.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12386.21 Da        Isoelectric Point: 8.5614

>NTDB_id=194486 BGI23_RS06520 WP_000578880.1 1249759..1250082(-) (sinR) [Bacillus sp. ABP14]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=194486 BGI23_RS06520 WP_000578880.1 1249759..1250082(-) (sinR) [Bacillus sp. ABP14]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATTGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCAATGAACTCCGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment