Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BGI23_RS00230 Genome accession   NZ_CP017016
Coordinates   41984..42268 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus sp. ABP14     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 36984..47268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI23_RS00195 (BGI23_00195) tmk 37138..37764 (+) 627 WP_000677231.1 dTMP kinase -
  BGI23_RS00200 (BGI23_00200) holB 37800..38783 (+) 984 WP_000169574.1 DNA polymerase III subunit delta' -
  BGI23_RS00205 (BGI23_00205) - 38789..39616 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  BGI23_RS00210 (BGI23_00210) yabA 39631..39981 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  BGI23_RS00215 (BGI23_00215) - 40102..40842 (+) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BGI23_RS00220 (BGI23_00220) - 40829..41119 (+) 291 WP_000414340.1 GIY-YIG nuclease family protein -
  BGI23_RS00225 (BGI23_00225) rsmI 41088..41963 (+) 876 WP_000267829.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BGI23_RS00230 (BGI23_00230) abrB 41984..42268 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BGI23_RS00235 (BGI23_00235) metG 42786..44768 (+) 1983 WP_000159677.1 methionine--tRNA ligase -
  BGI23_RS00240 (BGI23_00240) - 44935..45702 (+) 768 WP_070805065.1 TatD family hydrolase -
  BGI23_RS00245 (BGI23_00245) rnmV 45919..46476 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=194471 BGI23_RS00230 WP_000843036.1 41984..42268(-) (abrB) [Bacillus sp. ABP14]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=194471 BGI23_RS00230 WP_000843036.1 41984..42268(-) (abrB) [Bacillus sp. ABP14]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCGATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment