Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CCX85_RS00250 Genome accession   NZ_CP021640
Coordinates   33762..34517 (+) Length   251 a.a.
NCBI ID   WP_002986719.1    Uniprot ID   A2RBY9
Organism   Streptococcus pyogenes strain JS12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28762..39517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX85_RS09495 - 29777..29983 (-) 207 Protein_14 hypothetical protein -
  CCX85_RS09500 - 30137..30418 (-) 282 WP_109821002.1 transposase -
  CCX85_RS00240 (CCX85_00240) pcsB 31165..32361 (+) 1197 WP_020833179.1 peptidoglycan hydrolase PcsB -
  CCX85_RS00245 (CCX85_00245) - 32614..33576 (+) 963 WP_101248255.1 ribose-phosphate diphosphokinase -
  CCX85_RS00250 (CCX85_00250) recO 33762..34517 (+) 756 WP_002986719.1 DNA repair protein RecO Machinery gene
  CCX85_RS00255 (CCX85_00255) plsX 34620..35627 (+) 1008 WP_002987696.1 phosphate acyltransferase PlsX -
  CCX85_RS00260 (CCX85_00260) - 35620..35862 (+) 243 WP_014407187.1 phosphopantetheine-binding protein -
  CCX85_RS00265 (CCX85_00265) purC 36013..36717 (+) 705 WP_162292736.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29516.97 Da        Isoelectric Point: 6.9077

>NTDB_id=194398 CCX85_RS00250 WP_002986719.1 33762..34517(+) (recO) [Streptococcus pyogenes strain JS12]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=194398 CCX85_RS00250 WP_002986719.1 33762..34517(+) (recO) [Streptococcus pyogenes strain JS12]
ATGCAACTAACAGAATCACTAGGCATCGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTTAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGCACTGATTTA
CCGCTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATAACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTTATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RBY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602