Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM366_RS26015 Genome accession   NZ_CP021535
Coordinates   4988153..4988629 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0119     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4983153..4993629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM366_RS25985 (AM366_25955) - 4983653..4984537 (+) 885 WP_001116795.1 YfjP family GTPase -
  AM366_RS25990 (AM366_25960) - 4984740..4985420 (+) 681 WP_023356552.1 WYL domain-containing protein -
  AM366_RS25995 (AM366_25965) - 4985568..4986245 (+) 678 WP_001097302.1 hypothetical protein -
  AM366_RS26000 (AM366_25970) - 4986251..4986484 (+) 234 WP_001278293.1 DUF905 family protein -
  AM366_RS26005 (AM366_25975) - 4986574..4987392 (+) 819 WP_001175165.1 DUF932 domain-containing protein -
  AM366_RS26010 (AM366_25980) - 4987658..4988137 (+) 480 WP_000706978.1 antirestriction protein -
  AM366_RS26015 (AM366_25985) radC 4988153..4988629 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  AM366_RS26020 (AM366_25990) - 4988692..4988913 (+) 222 WP_023356553.1 DUF987 domain-containing protein -
  AM366_RS26030 (AM366_26000) - 4989076..4989444 (+) 369 WP_001360327.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM366_RS26035 (AM366_26005) - 4989534..4989911 (+) 378 WP_023356554.1 TA system toxin CbtA family protein -
  AM366_RS29330 - 4989908..4990057 (+) 150 Protein_4783 DUF5983 family protein -
  AM366_RS26040 - 4990136..4990330 (+) 195 WP_024181941.1 DUF957 domain-containing protein -
  AM366_RS26045 (AM366_26015) - 4990415..4991257 (+) 843 WP_022645115.1 DUF4942 domain-containing protein -
  AM366_RS30565 - 4991632..4991746 (+) 115 Protein_4786 integrase -
  AM366_RS26055 (AM366_26025) cadC 4992006..4993543 (+) 1538 Protein_4787 lysine decarboxylation/transport transcriptional activator CadC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=194396 AM366_RS26015 WP_001186774.1 4988153..4988629(+) (radC) [Escherichia coli strain AR_0119]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=194396 AM366_RS26015 WP_001186774.1 4988153..4988629(+) (radC) [Escherichia coli strain AR_0119]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399