Detailed information NTG0194330

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC55_RS12020
• Genome accession: NZ_CP016987
• Coordinates: 2555724..2556731 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116735.1
• Uniprot ID: A0A085SEX1
• Organism: Vibrio cholerae strain FORC_055 isolate MFDS
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2550724..2561731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC55_RS12010 (FORC55_2277)	cysM	2551884..2552771 (+)	888	WP_001279365.1	cysteine synthase CysM	-
FORC55_RS12015 (FORC55_2278)	mutS	2553039..2555627 (+)	2589	WP_032471716.1	DNA mismatch repair protein MutS	-
FORC55_RS12020 (FORC55_2279)	rpoS	2555724..2556731 (-)	1008	WP_000116735.1	RNA polymerase sigma factor RpoS	Regulator
FORC55_RS12025 (FORC55_2280)	nlpD	2556805..2557740 (-)	936	WP_096070684.1	murein hydrolase activator NlpD	-
FORC55_RS12030 (FORC55_2281)	-	2557740..2558366 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC55_RS12035 (FORC55_2282)	surE	2558359..2559111 (-)	753	WP_198302746.1	5'/3'-nucleotidase SurE	-
FORC55_RS12040 (FORC55_2283)	truD	2559113..2560198 (-)	1086	WP_095467739.1	tRNA pseudouridine(13) synthase TruD	-
FORC55_RS12045 (FORC55_2284)	ispF	2560228..2560704 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC55_RS12050 (FORC55_2285)	ispD	2560701..2561399 (-)	699	WP_042988183.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC55_RS12055 (FORC55_2286)	ftsB	2561396..2561680 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38504.37 Da
• Isoelectric Point: 4.3648

>NTDB_id=194330 FORC55_RS12020 WP_000116735.1 2555724..2556731(-) (rpoS) [Vibrio cholerae strain FORC_055 isolate MFDS]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=194330 FORC55_RS12020 WP_000116735.1 2555724..2556731(-) (rpoS) [Vibrio cholerae strain FORC_055 isolate MFDS]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGACGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTAGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTTTACCTATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCACACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A085SEX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.701	100	0.997