Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FORC55_RS11880 Genome accession   NZ_CP016987
Coordinates   2529361..2529879 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain FORC_055 isolate MFDS     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2524361..2534879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC55_RS11855 (FORC55_2254) rimM 2524470..2525024 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  FORC55_RS11860 (FORC55_2255) rpsP 2525052..2525300 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  FORC55_RS11865 (FORC55_2256) ffh 2525536..2526921 (-) 1386 WP_000462714.1 signal recognition particle protein -
  FORC55_RS11870 (FORC55_2257) - 2527134..2527928 (+) 795 WP_000369278.1 cytochrome C assembly family protein -
  FORC55_RS11875 (FORC55_2258) - 2528011..2529291 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  FORC55_RS11880 (FORC55_2259) luxS 2529361..2529879 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  FORC55_RS11885 (FORC55_2260) gshA 2529928..2531502 (-) 1575 WP_000032616.1 glutamate--cysteine ligase -
  FORC55_RS11890 (FORC55_2261) - 2531614..2534469 (-) 2856 WP_001233040.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=194327 FORC55_RS11880 WP_001130227.1 2529361..2529879(-) (luxS) [Vibrio cholerae strain FORC_055 isolate MFDS]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=194327 FORC55_RS11880 WP_001130227.1 2529361..2529879(-) (luxS) [Vibrio cholerae strain FORC_055 isolate MFDS]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGTAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTCGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCTGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment