Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC55_RS08265 Genome accession   NZ_CP016987
Coordinates   1746211..1747635 (+) Length   474 a.a.
NCBI ID   WP_001183692.1    Uniprot ID   A0A544H367
Organism   Vibrio cholerae strain FORC_055 isolate MFDS     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1741211..1752635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC55_RS08245 (FORC55_1552) - 1741607..1742392 (-) 786 WP_000718973.1 adenosylcobinamide-GDP ribazoletransferase -
  FORC55_RS08250 (FORC55_1553) cobT 1742392..1743417 (-) 1026 WP_198302730.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FORC55_RS08255 (FORC55_1554) msrB 1743902..1744348 (-) 447 WP_096070557.1 peptide-methionine (R)-S-oxide reductase MsrB -
  FORC55_RS08260 (FORC55_1555) - 1744694..1746067 (+) 1374 WP_000117953.1 L-cystine transporter -
  FORC55_RS08265 (FORC55_1556) sbcB 1746211..1747635 (+) 1425 WP_001183692.1 exodeoxyribonuclease I Machinery gene
  FORC55_RS08270 (FORC55_1557) - 1747667..1748041 (+) 375 WP_001927646.1 CidA/LrgA family protein -
  FORC55_RS08275 (FORC55_1558) - 1748032..1748706 (+) 675 WP_071179482.1 LrgB family protein -
  FORC55_RS08280 (FORC55_1559) cdd 1748876..1749763 (+) 888 WP_096070558.1 cytidine deaminase -
  FORC55_RS08285 (FORC55_1560) - 1749922..1750797 (+) 876 WP_000462870.1 AEC family transporter -
  FORC55_RS08290 (FORC55_1561) purT 1750951..1752126 (+) 1176 WP_000468083.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54500.86 Da        Isoelectric Point: 5.9820

>NTDB_id=194319 FORC55_RS08265 WP_001183692.1 1746211..1747635(+) (sbcB) [Vibrio cholerae strain FORC_055 isolate MFDS]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=194319 FORC55_RS08265 WP_001183692.1 1746211..1747635(+) (sbcB) [Vibrio cholerae strain FORC_055 isolate MFDS]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTTTTCGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCAAACACCACTAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATTGAGTGGCCGGAAAATGATGACGGCTTTACT
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAACAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAACTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A544H367

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

99.156

100

0.992

Multiple sequence alignment