Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | FORC55_RS01415 | Genome accession | NZ_CP016987 |
| Coordinates | 288979..289563 (+) | Length | 194 a.a. |
| NCBI ID | WP_161418895.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain FORC_055 isolate MFDS | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 283979..294563
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC55_RS01400 (FORC55_0248) | oxyR | 284385..285278 (+) | 894 | WP_001025909.1 | DNA-binding transcriptional regulator OxyR | - |
| FORC55_RS01405 (FORC55_0249) | - | 285353..287830 (-) | 2478 | WP_032481152.1 | penicillin-binding protein 1A | - |
| FORC55_RS01410 (FORC55_0250) | pilM | 287973..288989 (+) | 1017 | WP_032481153.1 | type IV pilus assembly protein PilM | Machinery gene |
| FORC55_RS01415 (FORC55_0251) | pilN | 288979..289563 (+) | 585 | WP_161418895.1 | PilN domain-containing protein | Machinery gene |
| FORC55_RS01420 (FORC55_0252) | pilO | 289556..290146 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FORC55_RS01425 (FORC55_0253) | pilP | 290136..290654 (+) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| FORC55_RS01430 (FORC55_0254) | pilQ | 290680..292395 (+) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| FORC55_RS01435 (FORC55_0255) | aroK | 292582..293106 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| FORC55_RS01440 (FORC55_0256) | aroB | 293134..294219 (+) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21954.38 Da Isoelectric Point: 9.9503
>NTDB_id=194303 FORC55_RS01415 WP_161418895.1 288979..289563(+) (pilN) [Vibrio cholerae strain FORC_055 isolate MFDS]
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTSASNPQAGGAHNG
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTSASNPQAGGAHNG
Nucleotide
Download Length: 585 bp
>NTDB_id=194303 FORC55_RS01415 WP_161418895.1 288979..289563(+) (pilN) [Vibrio cholerae strain FORC_055 isolate MFDS]
ATGTTGCATAAGGTCAACTTACTGCCATGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTAGCGGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGTGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACCACTGAGTTTATGAACCAAATGCC
AAACCTGATTCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACTTCAGCCTCTAACCCGCA
AGCGGGAGGTGCACACAATGGCTAG
ATGTTGCATAAGGTCAACTTACTGCCATGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTAGCGGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGTGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACCACTGAGTTTATGAACCAAATGCC
AAACCTGATTCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACTTCAGCCTCTAACCCGCA
AGCGGGAGGTGCACACAATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
99.485 |
100 |
0.995 |
| pilN | Vibrio campbellii strain DS40M4 |
60.452 |
91.237 |
0.552 |