Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AM396_RS19875 Genome accession   NZ_CP021532
Coordinates   3925154..3925669 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain AR_0149     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3920154..3930669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM396_RS19850 (AM396_19810) ygaZ 3920553..3921290 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  AM396_RS19855 (AM396_19815) ygaH 3921280..3921615 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AM396_RS19860 (AM396_19820) emrR 3921706..3922236 (+) 531 WP_087760810.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AM396_RS19865 (AM396_19825) emrA 3922363..3923535 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AM396_RS19870 (AM396_19830) emrB 3923552..3925090 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AM396_RS19875 (AM396_19835) luxS 3925154..3925669 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AM396_RS19880 (AM396_19840) gshA 3925819..3927375 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AM396_RS19885 (AM396_19845) yqaA 3927448..3927876 (-) 429 WP_039023139.1 YqaA family protein -
  AM396_RS19890 (AM396_19850) yqaB 3927873..3928439 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AM396_RS19920 (AM396_19880) csrA 3929897..3930082 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=194295 AM396_RS19875 WP_001130211.1 3925154..3925669(-) (luxS) [Escherichia coli strain AR_0149]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=194295 AM396_RS19875 WP_001130211.1 3925154..3925669(-) (luxS) [Escherichia coli strain AR_0149]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment