Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AM396_RS16590 Genome accession   NZ_CP021532
Coordinates   3235108..3236535 (+) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0149     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3230108..3241535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM396_RS16555 (AM396_16505) yeeW 3230292..3230486 (+) 195 WP_000988600.1 DUF5983 family protein -
  AM396_RS25630 - 3230532..3230612 (+) 81 Protein_3025 hypothetical protein -
  AM396_RS16560 (AM396_16510) - 3230901..3231047 (-) 147 Protein_3026 transposase domain-containing protein -
  AM396_RS16565 (AM396_16515) - 3231101..3231283 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AM396_RS16570 (AM396_16520) tmaR 3231384..3231713 (-) 330 WP_000450409.1 DUF496 family protein -
  AM396_RS16575 (AM396_16525) yeeA 3231885..3232943 (-) 1059 WP_001200890.1 FUSC family protein -
  AM396_RS16580 (AM396_16530) sbmC 3233141..3233614 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  AM396_RS16585 (AM396_16535) dacD 3233733..3234899 (-) 1167 WP_000830144.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AM396_RS16590 (AM396_16540) sbcB 3235108..3236535 (+) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  AM396_RS16595 (AM396_16545) tsuB 3236578..3236805 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AM396_RS16600 (AM396_16550) tsuA 3236819..3237877 (-) 1059 WP_000492333.1 thiosulfate utilization transporter TsuA/YeeE -
  AM396_RS16605 (AM396_16555) plaP 3238056..3239414 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AM396_RS25635 yoeI 3239404..3239466 (-) 63 WP_010723108.1 membrane protein YoeI -
  AM396_RS16610 (AM396_16560) yeeY 3239681..3240610 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  AM396_RS16615 (AM396_16565) yeeZ 3240656..3241480 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=194285 AM396_RS16590 WP_000980539.1 3235108..3236535(+) (sbcB) [Escherichia coli strain AR_0149]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=194285 AM396_RS16590 WP_000980539.1 3235108..3236535(+) (sbcB) [Escherichia coli strain AR_0149]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581