Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CCD82_RS11775 Genome accession   NZ_CP021522
Coordinates   2086310..2086837 (-) Length   175 a.a.
NCBI ID   WP_002229985.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 06-178     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2081310..2091837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD82_RS11760 (CCD82_11980) - 2081615..2082622 (+) 1008 WP_096101011.1 IS5 family transposase -
  CCD82_RS11770 (CCD82_11995) polA 2083369..2086185 (-) 2817 WP_002229990.1 DNA polymerase I -
  CCD82_RS11775 (CCD82_12000) luxS 2086310..2086837 (-) 528 WP_002229985.1 S-ribosylhomocysteine lyase Regulator
  CCD82_RS11780 (CCD82_12005) - 2086859..2087278 (-) 420 WP_002229986.1 DUF2251 domain-containing protein -
  CCD82_RS11790 (CCD82_12010) - 2087477..2088154 (-) 678 WP_002215827.1 IS1595-like element ISNme3 family transposase -
  CCD82_RS11795 (CCD82_12015) - 2088194..2089072 (-) 879 Protein_2012 YeiH family protein -
  CCD82_RS11800 (CCD82_12020) cyaY 2089099..2089422 (-) 324 WP_002218099.1 iron donor protein CyaY -
  CCD82_RS11805 (CCD82_12025) - 2089493..2089663 (+) 171 WP_002218098.1 lipoprotein -
  CCD82_RS11810 (CCD82_12030) lysA 2089674..2090894 (+) 1221 WP_002229987.1 diaminopimelate decarboxylase -
  CCD82_RS11815 (CCD82_12035) - 2090954..2091046 (-) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19454.30 Da        Isoelectric Point: 5.9132

>NTDB_id=194159 CCD82_RS11775 WP_002229985.1 2086310..2086837(-) (luxS) [Neisseria meningitidis strain 06-178]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCVPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADTWLASMQDVLNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNAQSAKNAV

Nucleotide


Download         Length: 528 bp        

>NTDB_id=194159 CCD82_RS11775 WP_002229985.1 2086310..2086837(-) (luxS) [Neisseria meningitidis strain 06-178]
ATGCCCCTGTTAGACAGTTTCAAAGTCGACCACACCCGTATGCACGCCCCTGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGATACCATTACCGTATTCGACCTGCGCTTTTGCGTTCCTAACAAAGAAATCCTGCCTGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGCTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATACGTGGCTGGCTTC
GATGCAGGATGTTTTGAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAATGAAGAGTTGACG
CTGGATGAAGGGCTGCTGAACGCCCAATCCGCCAAAAATGCCGTCTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

95.429

0.731

Multiple sequence alignment