Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   CCD82_RS01020 Genome accession   NZ_CP021522
Coordinates   194208..196397 (+) Length   729 a.a.
NCBI ID   WP_002229111.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 06-178     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 189208..201397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD82_RS01005 (CCD82_01050) - 189696..190874 (+) 1179 WP_002214393.1 MacA family efflux pump subunit -
  CCD82_RS01010 (CCD82_01055) - 190940..192874 (+) 1935 WP_002229109.1 MacB family efflux pump subunit -
  CCD82_RS01015 (CCD82_01060) - 193287..194069 (-) 783 WP_002260395.1 DsbC family protein -
  CCD82_RS01020 (CCD82_01065) priA 194208..196397 (+) 2190 WP_002229111.1 primosomal protein N' Machinery gene
  CCD82_RS01025 (CCD82_01070) - 196443..197516 (-) 1074 WP_002229110.1 NnrS family protein -
  CCD82_RS01030 (CCD82_01075) - 197564..198439 (-) 876 WP_079877115.1 IS110 family transposase -
  CCD82_RS01035 (CCD82_01085) - 198569..199576 (-) 1008 WP_149385544.1 IS5 family transposase -
  CCD82_RS01040 - 199640..199774 (-) 135 Protein_173 IS110 family transposase -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 80942.70 Da        Isoelectric Point: 7.7126

>NTDB_id=194099 CCD82_RS01020 WP_002229111.1 194208..196397(+) (priA) [Neisseria meningitidis strain 06-178]
MIYHRIAVNVPLSDGLLTYSHSDPLPPGTRVLVPFRNKTVVGMVWETDIAPDMDTARILSIQTTFLDEPPLPESWRDLLS
FTSRYYHYPTGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGGMTMAALKQVNAQA
AKLIEDWAEQGWIETTEAAKPVLRSCNGQASHSEFVLNADQQKASDAIQTALGRFQPFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVGNRFADVPTAVLHSQMAAGRRTQDYLRAMLGQAKLVIGTRLAVFTPMDDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQGGCPIILGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDILNVGRLKLD
NGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPIPYKCPDCG
NQDLTAVGHGTQRVEETLRTFLPKAAVVRVDRDSTAHKNDWADLYRRIADNKIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADAMEFLNAAKETLAPLLPESVSQFGAAPMLMVRLAERERAQIFLESTSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=194099 CCD82_RS01020 WP_002229111.1 194208..196397(+) (priA) [Neisseria meningitidis strain 06-178]
ATGATCTACCACCGCATCGCCGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCCCATTCCGATCCGCTTCCTCC
GGGAACGCGGGTGCTTGTGCCTTTCCGCAATAAAACCGTGGTCGGGATGGTGTGGGAAACGGATATTGCGCCGGATATGG
ATACGGCGCGGATTTTGAGTATTCAGACGACCTTTTTAGACGAGCCGCCGTTGCCTGAAAGCTGGCGTGATTTGCTCTCG
TTTACGTCGCGTTATTACCACTATCCGACGGGGCAGGCGGTGTTTGCCGCGCTGCCGCAGGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCGTTGTTTTATGCGTTGAACGAAGCGGGCAGGGCGCAAACGCCGCCGCCGGCGCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGGGATGACGATGGCGGCGTTGAAGCAGGTGAACGCGCAGGCG
GCGAAATTAATCGAAGATTGGGCGGAGCAGGGCTGGATTGAAACGACGGAAGCGGCGAAGCCCGTTTTAAGGTCGTGTAA
TGGGCAGGCTTCGCACTCTGAATTTGTATTAAATGCTGACCAGCAGAAGGCTTCCGATGCCATTCAGACGGCATTGGGAC
GCTTCCAGCCGTTTCTGCTGTACGGCATCACCGGCAGCGGCAAGACCGAAGTGTATTTCGATGCGATGGCGAAAGTGTTG
GCTCAGGGGCGGCAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTGAAGCGGGTGGGAAATCGTTT
TGCCGACGTGCCGACCGCCGTGTTGCACAGTCAGATGGCGGCAGGCAGGCGCACGCAGGATTATTTGCGCGCGATGTTGG
GGCAGGCGAAATTGGTCATCGGCACGCGGCTGGCGGTGTTTACGCCGATGGATGATGTCGGGCTGATTGTAGTCGATGAG
GAACACGACGGCTCGTTCAAACAAGACAACGAATTGCGCTACCACGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGGG
CGGCTGCCCCATCATATTGGGCAGTGCCACGCCCAGCTTGGAAAGCTGGCACAAGGCGCAAAGCGGCGCGTACCGCCTGC
TGCAACTGACCGAACGCGCCCATACCGCCGCGCAACTGCCGCAAGTGGACATTCTCAACGTAGGCCGTCTGAAACTCGAC
AACGGTTTCTCGCCGCAAGCCTTGCAGCTTTTGAAACAGAATTTTGAAGCGGGCGGTATGTCGCTGGTGTACCTCAACCG
GCGCGGCTTCGCACCCGCGCTGTTTTGCGGCGACTGCGGCCATACCTTCGGCTGCCCAAACTGCTCCGCCAAAATGGTAC
TGCACCAACGCGCCCGCCAACTGCGCTGTCACCACTGCGACCACCGCGAACCCATCCCGTACAAATGCCCCGACTGCGGC
AACCAAGACCTGACCGCCGTCGGCCACGGCACGCAGCGCGTCGAAGAAACCCTGCGCACCTTCCTGCCCAAGGCAGCCGT
CGTCCGTGTTGACAGGGACAGCACCGCGCACAAAAATGACTGGGCGGATTTGTACCGCCGCATCGCCGACAACAAAATCG
ACATTTTGGTCGGCACGCAGATGCTTGCCAAAGGCCATGATTTCGCGCGGCTCAACCTCGTTATCGTATTGAACGCCGAC
GGCAGCCTGTACAGCGCGGACTTTCGCGCGCCGGAAAGGCTGTTTGCCGAGCTGATGCAAGTGTCAGGCAGGGCGGGGCG
CGCCGACAAACCCGGCAAGGTGTTGATACAGACCCAACTGCCCGAACATCCTGTCTTCGCCGCCGTCAAAGCGCAAGACT
ATGCCGTGTTTGCCGAAAACGAATTGAACGAGCGGCAAATGTTCGCCATGCCGCCCTTCGGTTTCCAGACCGCCGTCCGC
GCCGATGCGCCGCGCGTTGCCGATGCGATGGAATTTCTCAATGCCGCCAAAGAAACCCTCGCCCCGCTGTTGCCCGAAAG
CGTTTCCCAGTTCGGCGCGGCCCCGATGCTGATGGTGCGCCTCGCCGAACGCGAACGCGCGCAAATCTTCCTCGAATCGA
CATCCCGACAGGATTTGCACCGTGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAAAACCGCGACGGCAAAATCAGATGG
TCGGTGGATGTCGATCCGCAGGAGGCTTGA

Domains

Predicted by InterProScan.

Primosomal protein N C-terminal domain (PriA_C)

(632-726)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

DEAD/DEAH box helicase (DEAD)

(207-361)

Helicase conserved C-terminal domain (Helicase_C)

(515-588)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.533

100

0.376