Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CCD83_RS12000 Genome accession   NZ_CP021521
Coordinates   2119176..2119682 (-) Length   168 a.a.
NCBI ID   WP_002230899.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 09-292     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2114176..2124682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD83_RS11985 (CCD83_12195) - 2114460..2115467 (+) 1008 WP_065824994.1 IS5 family transposase -
  CCD83_RS11995 (CCD83_12205) polA 2116214..2119030 (-) 2817 WP_002230901.1 DNA polymerase I -
  CCD83_RS12000 (CCD83_12210) luxS 2119176..2119682 (-) 507 WP_002230899.1 S-ribosylhomocysteine lyase Regulator
  CCD83_RS12005 (CCD83_12215) - 2119704..2120123 (-) 420 WP_002218100.1 DUF2251 domain-containing protein -
  CCD83_RS12010 (CCD83_12220) cyaY 2120154..2120477 (-) 324 WP_002218099.1 iron donor protein CyaY -
  CCD83_RS12015 (CCD83_12225) lptM 2120548..2120718 (+) 171 WP_002218098.1 LPS translocon maturation chaperone LptM -
  CCD83_RS12020 (CCD83_12230) lysA 2120729..2121973 (+) 1245 WP_002218097.1 diaminopimelate decarboxylase -
  CCD83_RS12025 (CCD83_12235) - 2122009..2122101 (-) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  CCD83_RS12030 (CCD83_12240) - 2122098..2123633 (-) 1536 WP_002221654.1 sodium-dependent transporter -
  CCD83_RS12035 (CCD83_12245) - 2123846..2124499 (-) 654 WP_065824993.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18739.52 Da        Isoelectric Point: 5.5451

>NTDB_id=194087 CCD83_RS12000 WP_002230899.1 2119176..2119682(-) (luxS) [Neisseria meningitidis strain 09-292]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVLNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=194087 CCD83_RS12000 WP_002230899.1 2119176..2119682(-) (luxS) [Neisseria meningitidis strain 09-292]
ATGCCCCTACTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACCGTGTTCGACCTGCGCTTTTGCATTCCCAACAAAGAAATCCTGCCTGAAAAAGGCATCC
ACACGCTGGAGCATTTGTTCGCAGGTTTTATGCGCGACCACTTGAACGGAAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTTTATATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCGTGGCTGGCTTC
GATGCAGGATGTTTTGAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAACAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAATGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

77.246

99.405

0.768