Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BFM96_RS02090 Genome accession   NZ_CP016953
Coordinates   440380..441741 (-) Length   453 a.a.
NCBI ID   WP_068989729.1    Uniprot ID   A0A917A3T5
Organism   Streptococcus himalayensis strain HTS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 435380..446741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS02065 rnmV 436521..437081 (-) 561 WP_068989724.1 ribonuclease M5 -
  BFM96_RS02070 - 437083..437856 (-) 774 WP_068994119.1 TatD family hydrolase -
  BFM96_RS02075 rpmH 438543..438680 (-) 138 WP_018368178.1 50S ribosomal protein L34 -
  BFM96_RS02080 - 438786..439298 (-) 513 WP_068989726.1 carbonic anhydrase -
  BFM96_RS02085 - 439470..440165 (-) 696 WP_068994122.1 TIGR00266 family protein -
  BFM96_RS02090 radA 440380..441741 (-) 1362 WP_068989729.1 DNA repair protein RadA Machinery gene
  BFM96_RS02095 - 441744..442187 (-) 444 WP_068989732.1 dUTP diphosphatase -
  BFM96_RS02100 - 442609..444051 (-) 1443 WP_068989735.1 LPXTG cell wall anchor domain-containing protein -
  BFM96_RS02105 - 444241..445176 (+) 936 WP_068989738.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49617.01 Da        Isoelectric Point: 6.0315

>NTDB_id=193998 BFM96_RS02090 WP_068989729.1 440380..441741(-) (radA) [Streptococcus himalayensis strain HTS2]
MAKKKTTFICQNCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKHARVSLTGEKTRPMKLAEVTSSHVSRTKTDMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQKGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQSIRTEIE
KIQPDFLIIDSIQTIMSPEISSVQGSVSQVREVTAELMQIAKTNNIATFVVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
QHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFIGEIGLTGEIR
RVNRIEQRINEAAKLGFTRLYAPKNSLIGLQIPQEIEVIGVTTIGEVLKKVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=193998 BFM96_RS02090 WP_068989729.1 440380..441741(-) (radA) [Streptococcus himalayensis strain HTS2]
ATGGCCAAGAAAAAGACAACCTTTATTTGCCAAAATTGTGAGTATCATTCCCCTAAATATCTGGGTCGCTGTCCCAACTG
TGGATCTTGGTCTTCCTTTGTCGAGGAAGTCGAGGTCGCAGAGGTCAAGCATGCGCGTGTGTCCTTGACAGGTGAGAAGA
CGCGTCCGATGAAGTTGGCGGAGGTGACCTCTAGTCATGTGAGCCGTACCAAGACAGATATGGAGGAGTTCAATCGTGTC
TTGGGGGGAGGAGTTGTGCCAGGGAGCCTCGTTCTGATAGGGGGGGACCCAGGGATTGGGAAATCAACTCTCCTTTTGCA
AGTATCAACCCAGCTATCGCAAAAAGGGACGGTTCTGTATGTTAGTGGTGAGGAATCGGCAGAGCAGATTAAATTGCGAG
CAGAGCGTTTGGGAGATATTGACAGTGAATTTTATCTCTATGCTGAGACCAATATGCAGAGTATTCGGACAGAGATTGAG
AAGATTCAGCCTGATTTTCTGATTATTGACTCTATCCAGACCATTATGAGCCCAGAGATTTCAAGTGTTCAAGGGTCGGT
CAGTCAGGTCAGAGAAGTGACGGCGGAGCTGATGCAGATTGCAAAGACCAACAATATTGCGACCTTTGTTGTGGGGCATG
TGACCAAGGAAGGCACGCTTGCAGGTCCTCGGATGCTAGAGCACATGGTGGATACCGTGCTCTATTTTGAGGGGGAGCGT
CAGCATACCTTCCGTATCTTGCGGGCTGTCAAAAATCGTTTTGGCTCTACCAATGAAATCGGCATTTTTGAAATGCAGTC
AGCAGGCTTAGTTGAGGTGCTCAATCCCAGTCAAGTCTTTTTGGAAGAACGCTTGGATGGAGCGACTGGCAGCAGTATTG
TCGTGACCATGGAAGGGACGCGTCCTATTTTAGCAGAAGTCCAAGCCTTGGTGACACCGACCATGTTTGGCAATGCCAAG
CGTACGACGACAGGGCTTGATTTTAATCGGGCTAGTCTCATCATGGCGGTTTTGGAAAAACGGGCTGGTTTATTGCTCCA
AAACCAAGACGCCTATCTCAAGTCTGCTGGGGGTGTCAAGTTAGATGAGCCGGCAATTGATTTGGCGGTTGCGGTTGCGA
TTGCTTCTAGCTACAAGGATAAGCCAACCAATCCCCAGGAATGTTTTATCGGTGAAATCGGCTTGACTGGTGAAATTCGC
CGTGTCAACCGCATTGAACAACGAATCAATGAAGCGGCTAAGCTGGGCTTTACTAGGCTTTATGCTCCAAAAAATTCCCT
TATAGGCTTACAAATCCCTCAAGAAATCGAAGTCATTGGCGTGACAACCATTGGCGAAGTGCTCAAGAAAGTATTCGGTT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

92.699

99.779

0.925
  radA Streptococcus pneumoniae D39

92.478

99.779

0.923
  radA Streptococcus pneumoniae R6

92.478

99.779

0.923
  radA Streptococcus pneumoniae Rx1

92.478

99.779

0.923
  radA Streptococcus mitis SK321

92.478

99.779

0.923
  radA Streptococcus pneumoniae TIGR4

92.478

99.779

0.923
  radA Bacillus subtilis subsp. subtilis str. 168

62.582

100

0.631

Multiple sequence alignment