Detailed information NTG0193992

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BFM96_RS01545
• Genome accession: NZ_CP016953
• Coordinates: 329144..331579 (-)
• Length: 811 a.a.
• NCBI ID: WP_068989472.1
• Uniprot ID: -
• Organism: Streptococcus himalayensis strain HTS2
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 324144..336579

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BFM96_RS01545	clpC	329144..331579 (-)	2436	WP_068989472.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
BFM96_RS01550	-	331583..332041 (-)	459	WP_068989474.1	CtsR family transcriptional regulator	-
BFM96_RS01555	tsf	332588..333628 (-)	1041	WP_068989476.1	translation elongation factor Ts	-
BFM96_RS01560	rpsB	333710..334492 (-)	783	WP_068989479.1	30S ribosomal protein S2	-

Sequence

Protein

• Length: 811 a.a.
• Molecular weight: 90079.05 Da
• Isoelectric Point: 6.3767

>NTDB_id=193992 BFM96_RS01545 WP_068989472.1 329144..331579(-) (clpC) [Streptococcus himalayensis strain HTS2]
MKYSKALEQSLASAQVLASHFETDYLESWQVLIAIANNPYSVAGSVLNDYPLEVDNLEEAAYTVTGKAYQKEAKPGKLAF
SYRLKELFATAEKIASATRSKSIGTEHVLLAMFLDRGSLVAHILEQAGFIYEETDKAVRIADLRKNLSQRAGWDKEAWKA
IRNLQKAPNPNKQNMANMMGMPQPQSGGLEDYTRDLTELARTGQLEPVIGRDEEISRMIQILSRKTKNNPVLVGDAGVGK
TALALGLAQRVASGSVPNEMAKMRVLELDLMNVVAGTRFRGDFEERMNNIITDIEEDGRVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKITIDEPSVADSIRILKGLRESYQAHHKVVISDEAIET
AVTYAHRYLTSKHLPDSAIDLLDEAAATVQNKGAKQGDMSQSELTELDVAVMDQQFKQVSRLLKKELSPQPFTLKVEEAD
ILTTLSRLSGIPVQKLSQTDAKKYLNLETELHKRIIGQDEAISAISRAIRRNQSGLKTSKRPIGSFMFLGPTGVGKTELA
KALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLD
DGVLTDSKGRKVDFSNTLIIMTSNLGATSLRDDKTVGFGARDVRFDHANMEKRMLEELKKAYRPEFINRIDEKVVFHSLS
SEHMQEVVKVMVGPLIAALRDKHVELKFQPSALKWLAKEGYDPEMGARPLRRTLQTQVEDPLSELLLKGELGEGRSLKVG
VKGDKLKFDIV

Nucleotide

• Length: 2436 bp

>NTDB_id=193992 BFM96_RS01545 WP_068989472.1 329144..331579(-) (clpC) [Streptococcus himalayensis strain HTS2]
ATGAAGTATTCAAAGGCCTTGGAGCAGAGCTTGGCGTCGGCTCAAGTGTTAGCTAGTCATTTTGAAACGGACTATCTGGA
GTCTTGGCAGGTCTTAATCGCGATTGCCAATAATCCCTATAGTGTAGCAGGCTCGGTCCTCAATGATTATCCTCTGGAGG
TGGACAATCTGGAAGAAGCGGCCTATACTGTGACAGGAAAAGCCTATCAAAAAGAAGCGAAACCAGGAAAACTTGCCTTT
TCTTATCGCTTGAAGGAATTGTTTGCAACAGCAGAGAAGATTGCCTCGGCTACTCGTTCAAAAAGTATAGGAACTGAGCA
TGTCCTTTTAGCGATGTTTTTGGATCGTGGTAGTCTTGTGGCTCATATTTTAGAGCAGGCAGGTTTTATCTATGAAGAGA
CGGATAAGGCTGTTCGGATTGCAGACTTGCGGAAAAATCTGAGCCAACGTGCGGGTTGGGACAAGGAAGCCTGGAAAGCC
ATTCGAAACTTGCAGAAAGCTCCTAATCCAAACAAGCAAAATATGGCCAATATGATGGGGATGCCACAACCGCAAAGCGG
TGGTCTGGAAGACTATACCCGTGATTTGACCGAACTAGCAAGAACTGGCCAATTAGAGCCGGTCATTGGTCGTGACGAAG
AGATTTCGCGAATGATTCAAATCCTGAGCCGAAAAACCAAAAATAATCCGGTCTTGGTCGGAGATGCGGGAGTTGGAAAA
ACAGCTTTGGCTTTAGGTCTTGCCCAACGAGTGGCAAGTGGATCTGTTCCTAACGAGATGGCTAAAATGCGGGTACTCGA
GCTAGATTTGATGAATGTGGTAGCAGGGACGCGTTTCCGTGGAGATTTCGAGGAGCGGATGAATAATATCATCACAGATA
TCGAAGAAGACGGCCGTGTTATTCTCTTTATTGATGAGTTGCATACCATTATGGGGTCTGGAAGCGGAATTGATTCGACC
TTGGACGCGGCAAATATTCTCAAGCCAGCCTTGGCACGTGGAACCCTTCGGACGGTTGGTGCAACGACTCAGGAAGAATA
CCAAAAGCATATCGAAAAAGATGCAGCTCTCTCTCGTCGTTTTGCGAAAATCACCATTGATGAGCCAAGTGTGGCAGACA
GCATTCGAATTTTGAAGGGATTGCGGGAAAGCTATCAAGCCCATCACAAGGTGGTGATTTCAGATGAAGCGATTGAAACG
GCAGTCACCTATGCCCATCGGTATTTGACCAGTAAGCACTTGCCAGATTCGGCTATTGATTTGCTAGATGAGGCAGCAGC
CACGGTGCAAAATAAGGGAGCAAAACAGGGGGATATGTCCCAGTCTGAGTTGACAGAACTGGATGTGGCGGTGATGGATC
AACAATTCAAACAAGTGTCTCGCCTATTGAAAAAAGAGCTATCTCCGCAACCCTTTACCCTAAAGGTGGAAGAGGCGGAT
ATCTTGACGACCTTGAGCCGTTTATCAGGTATTCCTGTTCAAAAGTTAAGTCAGACAGATGCCAAGAAATATTTGAATTT
GGAAACAGAACTGCATAAGCGTATCATCGGACAAGACGAAGCAATTTCAGCGATTAGCCGTGCGATTCGTCGCAATCAAT
CCGGCTTGAAAACCAGCAAGCGTCCTATCGGCTCCTTTATGTTTCTGGGGCCGACAGGGGTCGGAAAGACAGAGCTGGCT
AAGGCTTTGGCTGAATTGCTGTTTGATGATGAATCAGCTCTCATTCGCTTTGACATGAGTGAATATATGGAAAAATTTGC
AGCAAGTCGTTTGAACGGGGCTCCTCCGGGCTATGTTGGCTATGACGAGGGCGGCGAATTGACAGAGAAGGTCCGCAACA
AGCCTTACTCTGTCCTCCTCTTTGATGAGGTGGAAAAGGCTCATCCAGATATTTTCAATGTGCTCTTGCAGGTCTTGGAT
GACGGCGTTTTGACTGATAGCAAGGGACGCAAGGTTGATTTTTCAAATACCTTGATTATCATGACCAGCAACCTTGGGGC
GACCAGCCTTCGAGATGACAAAACCGTTGGATTTGGGGCACGTGATGTACGTTTTGACCATGCCAATATGGAAAAACGCA
TGTTAGAAGAGTTGAAAAAAGCCTATCGTCCAGAATTTATCAATAGGATTGATGAAAAGGTTGTTTTCCATAGTCTCTCG
AGTGAACATATGCAAGAAGTGGTCAAAGTCATGGTAGGTCCATTAATTGCAGCACTCAGAGACAAGCATGTGGAATTGAA
ATTCCAACCATCTGCTCTCAAATGGCTAGCAAAAGAAGGTTATGACCCAGAAATGGGGGCCAGACCCTTGCGACGAACCC
TCCAAACCCAAGTCGAAGATCCGCTATCAGAGTTACTGCTAAAAGGAGAACTAGGCGAAGGAAGGAGCTTGAAAGTCGGT
GTCAAAGGCGATAAACTCAAGTTTGACATAGTGTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (719-799)

• ATPase family associated with various cellular activities (AAA) (AAA) (231-362)

• AAA domain (Cdc48 subfamily) (AAA_2) (541-712)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-60)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (91-129)

• AAA lid domain (AAA_lid_9) (370-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae TIGR4	75.432	99.877	0.753
clpC	Streptococcus pneumoniae Rx1	75.432	99.877	0.753
clpC	Streptococcus pneumoniae D39	75.432	99.877	0.753
clpC	Streptococcus thermophilus LMG 18311	65.492	100	0.665
clpC	Streptococcus thermophilus LMD-9	65.371	100	0.663
clpC	Streptococcus mutans UA159	65.602	100	0.658
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.492	100	0.496
clpC	Bacillus subtilis subsp. subtilis str. 168	43.864	100	0.445
clpE	Streptococcus mutans UA159	47.284	77.189	0.365