Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BFM96_RS00090 Genome accession   NZ_CP016953
Coordinates   38085..38795 (+) Length   236 a.a.
NCBI ID   WP_068988814.1    Uniprot ID   A0A917EEB5
Organism   Streptococcus himalayensis strain HTS2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 33085..43795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS00075 pflA 33211..34008 (-) 798 WP_068988805.1 pyruvate formate-lyase-activating protein -
  BFM96_RS00080 treC 34200..35825 (-) 1626 WP_068988807.1 alpha,alpha-phosphotrehalase -
  BFM96_RS00085 treP 35902..37911 (-) 2010 WP_068988811.1 PTS system trehalose-specific EIIBC component -
  BFM96_RS00090 treR 38085..38795 (+) 711 WP_068988814.1 trehalose operon repressor Regulator
  BFM96_RS00095 - 38849..39169 (-) 321 WP_068988819.1 hypothetical protein -
  BFM96_RS00100 - 39434..40783 (-) 1350 WP_068988822.1 hemolysin family protein -
  BFM96_RS00110 - 41133..41996 (-) 864 WP_068988828.1 NAD(P)H-hydrate dehydratase -
  BFM96_RS00115 - 42008..42859 (-) 852 WP_068988829.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27681.75 Da        Isoelectric Point: 8.3056

>NTDB_id=193987 BFM96_RS00090 WP_068988814.1 38085..38795(+) (treR) [Streptococcus himalayensis strain HTS2]
MKKYQQIFKELERQILEETYLTGDFLPSEYELMARYAVSRDTVRKALEELQKAGLIQKIRGQGSKVLKKEQIDFPVSHLT
SYRELVEQYGINSITNVISLEKVTVDQKLSQLTGFPEFRIVWKIVRQRVVDNVASVLDTDYLDKQVAPELTRQIAEDSIY
AYLEEKLHLPIAYATKEITIDQARDRDKILMDIKGDHHVVSVKSKVYLTDGQQFQFTESRHKLEKFRFVDFAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=193987 BFM96_RS00090 WP_068988814.1 38085..38795(+) (treR) [Streptococcus himalayensis strain HTS2]
ATGAAGAAATACCAGCAGATTTTTAAAGAATTAGAACGACAGATTTTAGAGGAAACCTACCTAACCGGTGATTTTCTCCC
CAGCGAATACGAACTGATGGCACGCTATGCTGTCAGCCGTGATACCGTACGCAAGGCCCTTGAAGAGCTCCAAAAAGCAG
GCTTGATTCAAAAAATTCGTGGCCAAGGGTCAAAAGTGCTCAAAAAAGAGCAAATTGACTTTCCCGTTTCTCACTTGACC
AGCTATCGCGAATTGGTTGAGCAATACGGAATCAACTCCATCACGAATGTCATTAGTTTAGAAAAGGTCACTGTCGATCA
AAAATTATCCCAACTGACTGGCTTTCCTGAATTTCGCATTGTCTGGAAAATTGTCCGCCAACGGGTCGTGGATAATGTCG
CTTCTGTTCTTGACACGGATTATCTGGATAAACAGGTAGCTCCTGAGCTCACACGCCAAATCGCAGAGGATTCGATTTAT
GCCTATTTGGAAGAAAAACTCCATCTTCCAATTGCCTATGCCACAAAGGAAATTACCATCGATCAAGCAAGAGATCGGGA
TAAAATACTCATGGATATCAAGGGAGACCATCATGTAGTATCCGTCAAATCCAAGGTTTATCTTACAGATGGTCAACAAT
TTCAATTTACTGAGAGCCGCCATAAATTAGAAAAATTCCGCTTTGTCGATTTTGCCAAACGTCATCATTGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

63.404

99.576

0.631

Multiple sequence alignment