Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   CCD84_RS01025 Genome accession   NZ_CP021520
Coordinates   193257..195446 (+) Length   729 a.a.
NCBI ID   WP_149449354.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 11-7     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 188257..200446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD84_RS01010 (CCD84_01055) - 188745..189923 (+) 1179 WP_002214393.1 MacA family efflux pump subunit -
  CCD84_RS01015 (CCD84_01060) - 189989..191923 (+) 1935 WP_002229109.1 MacB family efflux pump subunit -
  CCD84_RS01020 (CCD84_01065) - 192336..193118 (-) 783 WP_002260395.1 DsbC family protein -
  CCD84_RS01025 (CCD84_01070) priA 193257..195446 (+) 2190 WP_149449354.1 primosomal protein N' Machinery gene
  CCD84_RS01030 (CCD84_01075) - 195492..196565 (-) 1074 WP_002229110.1 NnrS family protein -
  CCD84_RS01035 (CCD84_01080) - 196613..197545 (-) 933 Protein_170 IS110 family transposase -
  CCD84_RS01045 (CCD84_01090) - 197617..198573 (-) 957 Protein_171 IS5 family transposase -
  CCD84_RS01050 (CCD84_01095) - 198723..199679 (-) 957 Protein_172 IS5 family transposase -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 80932.66 Da        Isoelectric Point: 7.7126

>NTDB_id=193955 CCD84_RS01025 WP_149449354.1 193257..195446(+) (priA) [Neisseria meningitidis strain 11-7]
MIYHRIAVNVPLSDGLLTYSHSDPLPPGTRVLVPFRNKTVVGMVWETDIAPDMDTARILSIQTTFLDEPPLPESWRDLLS
FTSRYYHYPTGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGGMTMAALKQVNAQA
AKLIEDWAEQGWIETTEAAKPVLRSCNGQASHSEFVLNADQQKASDAIQTALGRFQPFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVGNRFADVPTAVLHSQMAAGRRTQDYLRAMLGQAKLVIGTRLAVFTPMDDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQGGCPIILGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDILNVGRLKLD
NGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPIPYKCPDCG
NQDLTAVGHGTQRVEETLRTFLPKAAVVRVDRDSTAHKNDWADLYRRIADNKIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADAMEFLNAAKETLAPLLPESVSQFGAASMLMVRLAERERAQIFLESTSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=193955 CCD84_RS01025 WP_149449354.1 193257..195446(+) (priA) [Neisseria meningitidis strain 11-7]
ATGATCTACCACCGCATCGCCGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCCCATTCCGATCCGCTTCCTCC
GGGAACGCGGGTGCTTGTGCCTTTCCGCAATAAAACCGTGGTCGGGATGGTGTGGGAAACGGATATTGCGCCGGATATGG
ATACGGCGCGGATTTTGAGTATTCAGACGACCTTTTTAGACGAGCCGCCGTTGCCTGAAAGCTGGCGTGATTTGCTCTCG
TTTACGTCGCGTTATTACCACTATCCGACGGGGCAGGCGGTGTTTGCCGCGCTGCCGCAGGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCGTTGTTTTATGCGTTGAACGAAGCGGGCAGGGCGCAAACGCCGCCGCCGGCGCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGGGATGACGATGGCGGCGTTGAAGCAGGTGAACGCGCAGGCG
GCGAAATTAATCGAAGATTGGGCGGAGCAGGGCTGGATTGAAACGACGGAAGCGGCGAAGCCCGTTTTAAGGTCGTGTAA
TGGGCAGGCTTCGCACTCTGAATTTGTATTAAATGCTGACCAGCAGAAGGCTTCCGATGCCATTCAGACGGCATTGGGAC
GCTTCCAGCCGTTTCTGCTGTACGGCATCACCGGCAGCGGCAAGACCGAAGTGTATTTCGATGCGATGGCGAAAGTGTTG
GCTCAGGGGCGGCAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTGAAGCGGGTGGGAAATCGTTT
TGCCGACGTGCCGACCGCCGTGTTGCACAGTCAGATGGCGGCAGGCAGGCGCACGCAGGATTATTTGCGCGCGATGTTGG
GGCAGGCGAAATTGGTCATCGGCACGCGGCTGGCGGTGTTTACGCCGATGGATGATGTCGGGCTGATTGTAGTCGATGAG
GAACACGACGGCTCGTTCAAACAAGACAACGAATTGCGCTACCACGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGGG
CGGCTGCCCCATCATATTGGGCAGTGCCACGCCCAGCTTGGAAAGCTGGCACAAGGCGCAAAGCGGCGCGTACCGCCTGC
TGCAACTGACCGAACGCGCCCATACCGCCGCGCAACTGCCGCAAGTGGACATTCTCAACGTAGGCCGTCTGAAACTCGAC
AACGGTTTCTCGCCGCAAGCCTTGCAGCTTTTGAAACAGAATTTTGAAGCGGGCGGTATGTCGCTGGTGTACCTCAACCG
GCGCGGCTTCGCACCCGCGCTGTTTTGCGGCGACTGCGGCCATACCTTCGGCTGCCCAAACTGCTCCGCCAAAATGGTAC
TGCACCAACGCGCCCGCCAACTGCGCTGTCACCACTGCGACCACCGCGAACCCATCCCGTACAAATGCCCCGACTGCGGC
AACCAAGACCTGACCGCCGTCGGCCACGGCACGCAGCGCGTCGAAGAAACCCTGCGCACCTTCCTGCCCAAGGCAGCCGT
CGTCCGTGTTGACAGGGACAGCACCGCGCACAAAAATGACTGGGCGGATTTGTACCGCCGCATCGCCGACAACAAAATCG
ACATTTTGGTCGGCACGCAGATGCTTGCCAAAGGCCATGATTTCGCGCGGCTCAACCTCGTTATCGTATTGAACGCCGAC
GGCAGCCTGTACAGCGCGGACTTTCGCGCGCCGGAAAGGCTGTTTGCCGAGCTGATGCAAGTGTCAGGCAGGGCGGGGCG
CGCCGACAAACCCGGCAAGGTGTTGATACAGACCCAACTGCCCGAACATCCTGTCTTCGCCGCCGTCAAAGCGCAAGACT
ATGCCGTGTTTGCCGAAAACGAATTGAACGAGCGGCAAATGTTCGCCATGCCGCCCTTCGGTTTCCAGACCGCCGTCCGC
GCCGATGCGCCGCGCGTTGCCGATGCGATGGAATTTCTCAATGCCGCCAAAGAAACCCTCGCCCCGCTGTTGCCCGAAAG
CGTTTCCCAGTTCGGCGCGGCCTCGATGCTGATGGTGCGCCTCGCCGAACGCGAACGCGCGCAAATCTTCCTCGAATCGA
CATCCCGACAGGATTTGCACCGTGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAAAACCGCGACGGCAAAATCAGATGG
TCGGTGGATGTCGATCCGCAGGAGGCTTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(515-588)

Primosomal protein N C-terminal domain (PriA_C)

(632-726)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

DEAD/DEAH box helicase (DEAD)

(207-361)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.4

100

0.374

Multiple sequence alignment