Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CCD84_RS00340 Genome accession   NZ_CP021520
Coordinates   56543..59656 (-) Length   1037 a.a.
NCBI ID   WP_149449318.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 11-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51543..64656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD84_RS00305 (CCD84_00310) - 52233..52844 (-) 612 WP_002234297.1 hypothetical protein -
  CCD84_RS00315 (CCD84_00330) - 53692..54081 (-) 390 WP_002217956.1 endonuclease domain-containing protein -
  CCD84_RS00320 (CCD84_00345) - 54642..54779 (-) 138 WP_002214606.1 VOC family protein -
  CCD84_RS00325 (CCD84_00350) carA 54825..55958 (-) 1134 WP_002235181.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  CCD84_RS00340 (CCD84_00365) pilC 56543..59656 (-) 3114 WP_149449318.1 PilC family type IV pilus tip adhesin Machinery gene
  CCD84_RS00355 (CCD84_00380) - 60450..61415 (+) 966 WP_002216744.1 IS30-like element IS1655 family transposase -
  CCD84_RS00365 (CCD84_00395) apbC 61996..63075 (-) 1080 WP_002257677.1 iron-sulfur cluster carrier protein ApbC -
  CCD84_RS00375 (CCD84_00405) - 63440..63949 (+) 510 WP_002229886.1 protein disulfide oxidoreductase -

Sequence

Protein


Download         Length: 1037 a.a.        Molecular weight: 113051.42 Da        Isoelectric Point: 9.7358

>NTDB_id=193949 CCD84_RS00340 WP_149449318.1 56543..59656(-) (pilC) [Neisseria meningitidis strain 11-7]
MNKTLKRQVFRHTALYAAILMFSHTGGGGGRAQAETRNYAIVMNKQNQPEVKREGSYSTLREKDRKRKFDFNANNGGGGS
VSFNNSDELVSRQNGTAVFGTATYLPPYGKVSGFDDKRLKERGNAVNWIHTTHPGLIGYSYAGVVCRNSTGCPQLVYKTR
FSFDNTGLAKNAGMLDSHPDPSRENSPIYKLKDYPWLGVSFNLGSENTVKNSQSSNRLISSFSENNNNQTIVSTTESHPI
SLGDGQREHTAVVYYLNAKLHLLNKKQIQNITDKTVQLGVLKPSIDVKTQRTGFGGILSFWASWDIKDTGQIPVKLGLQQ
VKAGRCITTPNPNPKSKAPSPALTAPALWFGAGQDGKAEMYSASVSTYPDSSSSRIYLQNLKRKTDSNRPGRYSLADLSA
SDIQSKEPTFTSRQTIIRLDGGVRHIQLDRNNEVTSFNGDNGTFGIVNEGSVVPESNEWKKVLLPWTVRGFADDSKFKAF
NKEKNNDNKPKYSQRYRIRENGNNGKRDLGDIVNSPIVAVGEYLATSANDGMVHIFKKGNGGDARDYSLKLSYIPGTMPR
KDIQSQDSTLAKELRAFAEKGYVGDRYGVDGGFVLRQVNNLNGQDRVFMFGAMGFGGRGAYALDLTKADGNDPTKASLFD
VKDNGNNGNNGNNRVELGYTVGTPQIGKTHNGKYAAFLASGYATKEITSGENKTALYVYDLENNNGTPIAKIEVPNGKGG
LSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSSDNPSSWTVRTIFQGTKPITSAPAISQLKDKRVVIFGTGSDLSEEDV
DNNDIQSIYGIFDNDTDTGFAQDGLGKGLLEQKLSEENKTLFLTDYKRSDGSGSKGWVVKLKDGQRVTVKPTVVLRTAFV
TIHKYTGTDKCGAETAILGINTADGGKLTKKSARPIVPAANSKVAQYSGDKKTANGKSIPIGCMEKGNETVCPNGYVYDK
PVNVRYLDEKKIDGFSTTADGDAGGSGIDPAGKRSGKNNRCFSQKGVRTLLMNDLDSLDITGPTCGMKRISWREIFY

Nucleotide


Download         Length: 3114 bp        

>NTDB_id=193949 CCD84_RS00340 WP_149449318.1 56543..59656(-) (pilC) [Neisseria meningitidis strain 11-7]
ATGAATAAAACTTTAAAAAGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGCGCGCGCAGGCGGAAACCCGTAACTACGCTATTGTCATGAACAAACAAAATCAGCCGGAGGTAAAGCGGG
AGGGTTCATATTCAACCTTAAGGGAAAAAGACAGGAAACGCAAATTTGACTTTAATGCGAACAACGGGGGTGGAGGCTCT
GTCTCATTCAACAATAGCGATGAGCTTGTTTCTCGACAAAACGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCGCC
CTACGGCAAGGTTTCCGGTTTTGATGACAAAAGGCTGAAAGAGCGCGGCAATGCCGTTAATTGGATTCATACGACCCACC
CAGGGTTGATAGGCTACAGCTACGCCGGTGTCGTATGCAGAAACAGCACAGGCTGTCCCCAACTTGTCTATAAAACCCGA
TTTTCCTTCGACAACACCGGTTTGGCAAAAAATGCGGGCATGCTGGATAGTCACCCGGACCCAAGCCGCGAAAATTCGCC
CATTTACAAATTGAAAGATTATCCATGGTTGGGCGTATCTTTCAATTTGGGCAGCGAGAATACCGTCAAAAATAGCCAAT
CATCCAACAGATTGATATCTTCTTTTAGTGAAAACAATAATAATCAAACCATCGTCTCTACGACAGAAAGCCACCCTATT
TCCCTTGGCGACGGGCAGCGCGAACATACCGCCGTGGTCTATTATCTGAACGCCAAGCTGCACCTGCTGAATAAAAAACA
GATTCAAAATATCACCGACAAAACAGTGCAGTTGGGTGTCTTGAAGCCGAGCATCGATGTGAAGACACAAAGGACGGGGT
TTGGCGGCATTCTATCTTTTTGGGCTAGTTGGGACATTAAAGATACCGGGCAGATTCCAGTCAAGCTCGGCCTGCAGCAA
GTCAAAGCAGGCCGCTGCATCACCACACCGAACCCCAATCCCAAATCCAAAGCCCCTTCGCCGGCACTGACCGCCCCCGC
GCTGTGGTTCGGAGCTGGGCAAGATGGTAAGGCGGAGATGTATTCCGCTTCGGTTTCCACCTACCCCGACAGTTCGAGCA
GCCGCATCTACCTTCAAAATCTGAAAAGAAAAACCGACTCCAACAGACCCGGCCGCTATTCCCTCGCAGACTTGAGTGCG
TCGGATATTCAAAGTAAAGAGCCGACTTTCACAAGTCGGCAAACAATCATCCGCTTGGATGGTGGCGTACGGCATATCCA
ACTGGATAGAAACAATGAGGTCACTAGTTTTAATGGCGACAACGGAACTTTCGGCATTGTTAATGAAGGGAGCGTCGTTC
CTGAAAGCAACGAGTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCGGGGTTTTGCTGATGACAGTAAATTTAAAGCATTC
AACAAAGAAAAAAACAACGACAACAAGCCAAAATACAGCCAAAGATACCGCATCCGCGAAAACGGCAACAACGGCAAGCG
CGATTTGGGCGACATCGTCAACAGCCCCATCGTGGCGGTCGGCGAGTATTTGGCTACTTCCGCCAACGACGGGATGGTGC
ATATCTTCAAAAAAGGCAACGGCGGGGACGCGCGCGACTATAGTCTGAAGCTCAGCTACATCCCGGGCACGATGCCGCGC
AAGGATATTCAAAGTCAAGACTCCACCCTCGCCAAAGAGCTGCGCGCCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTA
CGGCGTGGACGGCGGCTTTGTCTTGCGCCAAGTTAACAACTTAAATGGGCAAGACCGCGTGTTTATGTTCGGCGCGATGG
GCTTTGGCGGCAGAGGTGCGTATGCCTTGGATTTGACCAAAGCCGACGGCAATGACCCGACAAAAGCCTCTTTGTTTGAT
GTAAAAGATAACGGCAATAATGGCAATAACGGCAATAATCGCGTGGAATTAGGCTACACCGTCGGCACGCCGCAAATCGG
CAAAACCCACAACGGCAAATACGCCGCTTTCCTCGCCTCCGGTTATGCGACTAAAGAAATTACCAGCGGCGAGAATAAAA
CCGCGCTGTATGTGTATGATTTGGAAAACAACAACGGTACGCCGATTGCAAAAATCGAAGTACCCAACGGCAAGGGCGGG
CTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACGGTCGATATCGCCTATGCCGGCGATCGCGGCGGGAATAT
GTACCGCTTTGATTTGAGCAGCGACAATCCGTCCAGCTGGACTGTACGCACTATTTTCCAAGGCACGAAGCCGATTACTT
CCGCGCCCGCCATTTCCCAACTGAAAGACAAACGCGTGGTTATCTTCGGCACGGGCAGTGATTTGAGTGAGGAAGATGTT
GATAATAATGATATACAATCTATTTACGGTATTTTTGACAATGACACAGACACGGGTTTTGCGCAAGACGGGCTGGGCAA
AGGGCTGCTCGAGCAAAAGCTTAGTGAGGAAAATAAAACCTTATTCCTGACCGATTACAAGCGATCCGACGGATCGGGCA
GCAAAGGGTGGGTAGTGAAATTGAAGGACGGACAGCGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTA
ACCATCCATAAATATACGGGTACGGACAAATGCGGCGCGGAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCAA
GCTGACCAAGAAAAGCGCGCGCCCGATTGTGCCGGCAGCCAATTCGAAGGTCGCGCAATATTCCGGCGATAAGAAAACCG
CCAACGGCAAATCCATCCCTATAGGTTGTATGGAAAAAGGCAATGAAACCGTCTGCCCGAACGGATATGTTTACGACAAA
CCGGTTAATGTGCGTTATCTGGATGAAAAGAAAATAGACGGATTTTCAACAACGGCAGACGGCGATGCGGGCGGCAGCGG
TATAGACCCCGCCGGCAAGCGTTCCGGCAAAAACAACCGCTGCTTCTCCCAAAAAGGGGTGCGCACCCTGCTGATGAACG
ATTTGGACAGCTTGGACATTACCGGCCCGACGTGCGGTATGAAACGAATCAGCTGGCGTGAAATCTTCTACTGA

Domains

Predicted by InterProScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(509-844)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

78.952

100

0.799