Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   A9P79_RS13775 Genome accession   NZ_CP016950
Coordinates   378342..379820 (-) Length   492 a.a.
NCBI ID   WP_115705754.1    Uniprot ID   -
Organism   Cupriavidus taiwanensis strain SWF66294     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 373342..384820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9P79_RS13745 (A9P79_13510) - 373779..374438 (-) 660 WP_115706199.1 LON peptidase substrate-binding domain-containing protein -
  A9P79_RS13750 (A9P79_13515) rapZ 374530..375408 (-) 879 WP_115679306.1 RNase adapter RapZ -
  A9P79_RS13755 (A9P79_13520) - 375517..375909 (-) 393 WP_240073669.1 PsiF family protein -
  A9P79_RS13760 (A9P79_13525) hprK 376080..377051 (-) 972 WP_115705752.1 HPr(Ser) kinase/phosphatase -
  A9P79_RS13765 (A9P79_13530) - 377134..377589 (-) 456 WP_018008706.1 PTS sugar transporter subunit IIA -
  A9P79_RS13770 (A9P79_13535) hpf 377943..378293 (-) 351 WP_010814386.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  A9P79_RS13775 (A9P79_13540) rpoN/rpoN1 378342..379820 (-) 1479 WP_115705754.1 RNA polymerase factor sigma-54 Machinery gene
  A9P79_RS13780 (A9P79_13545) lptB 379944..380744 (-) 801 WP_240073671.1 LPS export ABC transporter ATP-binding protein -
  A9P79_RS13785 (A9P79_13550) lptA 380753..381394 (-) 642 WP_240073673.1 lipopolysaccharide transport periplasmic protein LptA -
  A9P79_RS13790 (A9P79_13555) lptC 381515..382144 (-) 630 WP_115663094.1 LPS export ABC transporter periplasmic protein LptC -
  A9P79_RS13795 (A9P79_13560) - 382191..383174 (-) 984 WP_115706200.1 KpsF/GutQ family sugar-phosphate isomerase -
  A9P79_RS13800 - 383061..383318 (+) 258 WP_172582596.1 hypothetical protein -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54667.89 Da        Isoelectric Point: 4.9633

>NTDB_id=193947 A9P79_RS13775 WP_115705754.1 378342..379820(-) (rpoN/rpoN1) [Cupriavidus taiwanensis strain SWF66294]
MKPSLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVEQALTENPLLERENDWIESPLRVAADGSVNVQSAPAPAPAEPQ
GNGDARAEGAADDNYSDNSSGDDYGNSDWSLDDFARRPQGDEDEKTPMQLRDAEPTLREYLMEQLTPLKISARDKGLAIF
LIESLDDDGYLSASLEEICAELPEELEFDPDEVHAILTLLQSFDPAGVGARNAAECLALQLRRLTHPQRELALTIVTHHL
ELLAVRDYTRLKKALQVDEVALKAAHDLIRSLAPYPGHAYSRPEADFVVPDVFVRKSGGGWTAQLNPDVMPRLRINDMYA
QILRGAKGETGTAGLQQKLQEARWLIKNIQQRFDTILRVSQAIVERQKNFFTHGEIAMRPLVLREIADTLGLHESTISRV
TTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLIGAEDPRNPLSDSRIAELLGEQGFVVARRTVAKYREA
LKIPAVNLRKSL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=193947 A9P79_RS13775 WP_115705754.1 378342..379820(-) (rpoN/rpoN1) [Cupriavidus taiwanensis strain SWF66294]
ATGAAACCGTCGCTACAGCTCCGCCTCTCCCAGCACCTGGCCCTGACCCCGCAGCTGCAACAGTCGATCCGGCTGCTGCA
GCTCTCCACGCTGGAATTGCAGCAGGAAGTCGAACAGGCGCTGACGGAAAACCCGCTGCTCGAGCGGGAGAACGACTGGA
TCGAAAGCCCGCTGCGCGTGGCCGCCGATGGCTCGGTCAACGTACAGAGCGCGCCCGCGCCCGCCCCCGCCGAGCCCCAG
GGCAATGGCGATGCGCGCGCCGAGGGCGCTGCCGATGACAACTACAGCGACAACAGCAGCGGCGACGACTACGGCAACAG
CGACTGGAGCCTGGATGACTTCGCCCGCCGCCCGCAAGGCGACGAGGACGAAAAGACGCCGATGCAGCTGCGCGATGCCG
AGCCCACGCTGCGCGAATACCTGATGGAGCAGCTGACGCCGCTGAAGATCTCGGCGCGCGACAAGGGTCTCGCCATCTTC
CTGATCGAATCGCTCGATGACGACGGCTACCTGAGCGCCTCGCTCGAAGAGATCTGCGCGGAGCTGCCCGAAGAGCTGGA
GTTCGACCCCGACGAAGTCCACGCCATCCTGACGCTGCTGCAGAGCTTCGACCCGGCCGGCGTGGGCGCGCGCAATGCCG
CCGAATGCCTGGCGCTGCAATTGCGCCGCCTGACCCACCCGCAGCGCGAACTGGCGCTGACCATCGTCACCCATCACCTG
GAACTGCTGGCGGTACGTGACTACACGCGACTGAAGAAGGCCCTGCAGGTCGATGAAGTCGCGCTCAAGGCCGCGCATGA
CCTGATCCGCTCGCTCGCACCCTACCCGGGCCACGCGTACAGCCGCCCCGAGGCCGATTTCGTCGTGCCCGACGTGTTCG
TGCGCAAGAGCGGCGGCGGCTGGACCGCGCAGCTCAATCCGGATGTGATGCCGAGGCTGCGCATCAACGATATGTATGCC
CAGATCCTGCGCGGCGCCAAGGGCGAAACCGGCACGGCGGGACTGCAGCAGAAGCTGCAGGAGGCACGCTGGCTGATCAA
GAATATCCAGCAAAGGTTCGACACGATCCTGCGTGTCTCGCAGGCCATTGTCGAGCGTCAAAAGAACTTTTTCACCCACG
GTGAAATCGCCATGCGCCCCTTGGTTTTGCGGGAGATTGCCGATACACTGGGTTTACACGAGTCAACCATCTCCCGGGTG
ACGACCAATAAATATATGGCTACGCCGATGGGTACTTTCGAACTGAAGTACTTCTTCGGTAGCCACGTGTCCACCGAAAC
CGGTGGCGCGGCTTCATCAACGGCCATCCGCGCCTTGATCAAGCAACTGATAGGAGCCGAAGACCCGAGGAATCCCCTTT
CCGACAGTCGCATCGCCGAACTGCTGGGCGAACAGGGCTTCGTTGTCGCACGCCGCACCGTTGCCAAATATCGTGAAGCC
TTGAAAATCCCCGCAGTCAATCTCCGCAAGTCTTTGTAG

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(335-490)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-319)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

79.6

100

0.809

Multiple sequence alignment