Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A8C11_RS20620 Genome accession   NZ_CP016923
Coordinates   3782796..3783392 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae isolate 11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3777796..3788392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8C11_RS20600 (A8C11_20600) - 3777988..3779745 (-) 1758 WP_004179203.1 AAA family ATPase -
  A8C11_RS20605 (A8C11_20605) matP 3779931..3780383 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  A8C11_RS20610 (A8C11_20610) ompA 3780515..3781585 (-) 1071 WP_002898408.1 porin OmpA -
  A8C11_RS20615 (A8C11_20615) sulA 3781938..3782447 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  A8C11_RS20620 (A8C11_20620) sxy/tfoX 3782796..3783392 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  A8C11_RS20625 (A8C11_20625) yccS 3783406..3785541 (-) 2136 WP_002898422.1 YccS family putative transporter -
  A8C11_RS20630 (A8C11_20630) - 3785559..3786005 (-) 447 WP_002898425.1 YccF domain-containing protein -
  A8C11_RS20635 (A8C11_20635) helD 3786131..3788185 (+) 2055 WP_004179218.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=193751 A8C11_RS20620 WP_004179217.1 3782796..3783392(+) (sxy/tfoX) [Klebsiella pneumoniae isolate 11]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=193751 A8C11_RS20620 WP_004179217.1 3782796..3783392(+) (sxy/tfoX) [Klebsiella pneumoniae isolate 11]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment