Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BC350_RS05390 Genome accession   NZ_CP016914
Coordinates   1095964..1097496 (+) Length   510 a.a.
NCBI ID   WP_058907452.1    Uniprot ID   A0A454TWD8
Organism   Ralstonia pseudosolanacearum strain CQPS-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1090964..1102496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC350_RS05365 (BC350_05220) - 1091371..1092921 (-) 1551 WP_020831101.1 ammonium transporter -
  BC350_RS05370 (BC350_05225) - 1092954..1093292 (-) 339 WP_011000306.1 P-II family nitrogen regulator -
  BC350_RS05375 (BC350_05230) - 1093339..1094145 (-) 807 WP_089190482.1 TorF family putative porin -
  BC350_RS05380 (BC350_05235) - 1094696..1094959 (+) 264 WP_011000304.1 accessory factor UbiK family protein -
  BC350_RS05385 (BC350_05240) - 1095239..1095754 (+) 516 WP_011000303.1 hypothetical protein -
  BC350_RS05390 (BC350_05245) comM 1095964..1097496 (+) 1533 WP_058907452.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BC350_RS05395 (BC350_05250) - 1097640..1099130 (+) 1491 WP_058907451.1 tyrosinase family protein -
  BC350_RS05400 (BC350_05255) - 1099177..1099653 (+) 477 WP_058907450.1 hypothetical protein -
  BC350_RS05405 (BC350_05260) - 1099795..1100355 (-) 561 WP_058907449.1 hypothetical protein -
  BC350_RS05410 (BC350_05265) - 1100455..1100970 (+) 516 WP_016724225.1 O-acetyl-ADP-ribose deacetylase -
  BC350_RS05415 (BC350_05270) - 1101074..1101625 (+) 552 WP_029240201.1 TlpA disulfide reductase family protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54584.29 Da        Isoelectric Point: 7.8372

>NTDB_id=193674 BC350_RS05390 WP_058907452.1 1095964..1097496(+) (comM) [Ralstonia pseudosolanacearum strain CQPS-1]
MSLAVLRSRALAGIDAPAVSVEVHLANGLPSFTIVGLPDTEVKESKDRVRAAIQNSRFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASRQIPHTHLDAHEFAGELSLSGDLRPIRGALAMAYALSRQPGPPDGDAPRPRAFVLPTENAAEAALVS
GTRVLPAHTLIEVCDHLSTPDRKLASAVPAPIGASVHYPDLADVRGQPQARRALEVAAAGGHSMLMIGPPGTGKSMLAQR
FPGLLPDMSDDEALSAAAVMSLTTRGFDAQRWKVRPFRAPHHTASAVAMVGGGNTPRPGEISLAHQGVLFLDELPEFERR
VLEVLREPLETGHITISRAAHQTDFPASFQLIAAMNPCPCGYRGHPLRACRCTPDQVDRYQARLSGPLLDRIDVQIEVPT
PSQEELLDGPPGEPTAAVAARVAAAHARQRARQGKRNALLAGHEIDLHCTRTDAADSLLRQAMTRFSWSARAYARVLKLA
RTIADLAGDAAVDTAHVGEAIQYRRGVKAD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=193674 BC350_RS05390 WP_058907452.1 1095964..1097496(+) (comM) [Ralstonia pseudosolanacearum strain CQPS-1]
ATGAGTCTTGCCGTCCTGCGTTCACGGGCGCTGGCCGGCATCGACGCGCCGGCGGTATCGGTGGAGGTGCACCTGGCCAA
CGGACTGCCCTCCTTCACCATCGTCGGTCTGCCGGACACGGAGGTGAAGGAAAGCAAGGACCGCGTGCGCGCGGCCATCC
AGAACAGCCGCTTCGAGTTTCCCGCGCGGCGCATCACCGTCAACCTGGCGCCGGCCGATCTGCCGAAAGAGTCGGGCCGC
TTCGACCTGCCGATCGCCCTGGGCATCCTCGCCGCCAGCCGGCAGATTCCGCACACGCACCTGGACGCGCACGAGTTTGC
AGGAGAGCTGTCGCTGTCGGGCGACCTGCGGCCGATCCGTGGCGCGCTGGCCATGGCATATGCGCTGTCGCGCCAGCCGG
GGCCGCCCGATGGCGACGCACCGCGCCCTCGCGCCTTTGTCCTGCCCACCGAGAATGCCGCCGAGGCGGCGCTGGTCAGC
GGCACCCGGGTGCTGCCGGCGCACACGCTGATCGAGGTCTGCGACCATCTGTCCACGCCCGACCGCAAGCTGGCGAGCGC
CGTGCCCGCCCCAATCGGCGCCAGCGTCCACTATCCCGACCTGGCCGACGTACGCGGCCAGCCGCAGGCGCGCCGCGCCC
TGGAAGTGGCAGCGGCCGGTGGCCACTCGATGCTGATGATCGGTCCGCCCGGCACCGGCAAGTCCATGCTGGCCCAGCGC
TTTCCCGGCTTGCTGCCCGACATGAGCGACGACGAGGCGCTCTCCGCTGCCGCGGTGATGAGCCTGACCACGCGCGGTTT
CGATGCGCAGCGCTGGAAGGTGCGTCCGTTCCGCGCGCCGCACCACACGGCGTCGGCGGTGGCGATGGTGGGAGGCGGCA
ACACGCCGCGGCCGGGCGAGATTTCGCTGGCGCATCAGGGCGTACTGTTCCTCGATGAATTGCCCGAATTCGAGCGCCGC
GTGCTGGAGGTCCTGCGGGAGCCGCTGGAAACCGGCCACATCACCATCTCCCGCGCGGCGCACCAGACGGATTTTCCCGC
CAGTTTCCAGCTGATCGCGGCCATGAATCCGTGCCCGTGCGGCTATCGCGGGCATCCATTGCGCGCGTGCCGGTGCACGC
CGGACCAGGTGGATCGCTATCAGGCCCGCCTCTCCGGCCCGCTGCTCGATCGCATCGACGTGCAGATCGAGGTGCCGACG
CCATCGCAGGAGGAATTGCTCGATGGCCCGCCCGGCGAGCCGACCGCCGCCGTGGCCGCGCGCGTGGCGGCGGCGCATGC
ACGGCAACGGGCGCGCCAGGGCAAACGCAACGCACTGCTGGCCGGGCACGAGATCGATCTGCATTGCACGCGCACCGACG
CTGCCGACAGCCTGCTGCGCCAGGCGATGACGCGCTTCTCTTGGTCGGCCCGCGCCTATGCGCGCGTGCTCAAGCTCGCC
CGCACCATCGCCGACCTGGCGGGCGACGCGGCTGTCGATACGGCGCACGTTGGCGAAGCCATCCAATACCGGCGCGGCGT
GAAAGCAGACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-405)

Subunit ChlI of Mg-chelatase (ChlI)

(21-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A454TWD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.755

99.216

0.533
  comM Vibrio campbellii strain DS40M4

52.673

99.02

0.522
  comM Legionella pneumophila str. Paris

51.373

100

0.514
  comM Legionella pneumophila strain ERS1305867

51.373

100

0.514
  comM Glaesserella parasuis strain SC1401

51.373

100

0.514
  comM Haemophilus influenzae Rd KW20

49.903

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.578

100

0.427

Multiple sequence alignment