Detailed information NTG0193661

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BARD7_RS16585
• Genome accession: NZ_CP016913
• Coordinates: 3351153..3352298 (+)
• Length: 381 a.a.
• NCBI ID: WP_076983252.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain RD7-7
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3346153..3357298

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BARD7_RS16565 (BARD7_03380)	argS	3346798..3348468 (-)	1671	WP_065982573.1	arginine--tRNA ligase	-
BARD7_RS16570 (BARD7_03381)	-	3348465..3348893 (-)	429	WP_065982574.1	DUF1934 domain-containing protein	-
BARD7_RS19395	-	3349046..3349488 (+)	443	Protein_3275	bacteriocin biosynthesis protein AlbG	-
BARD7_RS16580 (BARD7_03382)	-	3349530..3350924 (-)	1395	WP_065982575.1	YncE family protein	-
BARD7_RS16585 (BARD7_03383)	rapF	3351153..3352298 (+)	1146	WP_076983252.1	tetratricopeptide repeat protein	Regulator
BARD7_RS19040 (BARD7_03384)	-	3352282..3352401 (+)	120	WP_115996635.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
BARD7_RS16590 (BARD7_03385)	speB	3352535..3353407 (-)	873	WP_065982576.1	agmatinase	-
BARD7_RS16595 (BARD7_03386)	speE	3353466..3354296 (-)	831	WP_013353957.1	spermidine synthase	-
BARD7_RS16600 (BARD7_03387)	-	3354496..3356568 (+)	2073	WP_065982577.1	transglycosylase domain-containing protein	-
BARD7_RS16605 (BARD7_03388)	-	3356593..3357025 (-)	433	Protein_3282	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45696.06 Da
• Isoelectric Point: 5.1389

>NTDB_id=193661 BARD7_RS16585 WP_076983252.1 3351153..3352298(+) (rapF) [Bacillus amyloliquefaciens strain RD7-7]
MASVVSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELEHAEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVTDQIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKNGDNYSIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELDQQPQLMGRTLFNIALCHNNQNNKDK
AIPHLKKAIAVFEKAQMIHSLPQPYFLLTQIYYKLENIDNAYDYHKKGVSICKEIDDIIYEEKFKFLEYLYTPNPRDILI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=193661 BARD7_RS16585 WP_076983252.1 3351153..3352298(+) (rapF) [Bacillus amyloliquefaciens strain RD7-7]
GTGGCGAGTGTTGTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGAGCATGCAGAGGATGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTGGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGCCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAATTGACGTACG
TTACAGATCAGATAGAAAAAGCGGAATTTTACTTTAAGATGTCAGAAGTCTATTACTATATGAAACAAACTTATGTTTCA
ATGGACTATGCGCGGCAAGCTTATTTAATTTATAAAAATGGGGATAATTATAGCATTAGGTTGACTCAGTGCCATTCTTT
GTTTGGCGCTAATTATCTTGATGTAAAGCAATATGATCATGCGATATCCCACTTTCAAAAAGCATATACGATGGCTGAAC
TGGATCAGCAGCCTCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGATAAA
GCTATTCCTCATTTAAAAAAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGATTCACTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTATAAGTTAGAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTGTCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAGAAATTTAAATTTTTGGAATATTTATACACGCCGAATCCAAGAGATATATTAATA
AATGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCTCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_8) (223-250)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	69.554	100	0.696
rapC	Bacillus subtilis subsp. subtilis str. 168	53.684	99.738	0.535